Hg_chrom2_TN10mRNA_3098
Organism: Heterodera glycines Gene Locus: chr2:5317310-5319419 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 1.397 | 0.76 | 0.72 | 1.654 | 1.004 | 0.591 | 1.567 | 1.044 | 1.164 | 0.791 | 2.15 | 0.87 | 0.753 | 1.865 | 0.895 | 0.514 | 0.989 | 0.803 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2959
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
RRAADEHAAAAAVFNRRRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.229
|
0.354
|
0.023
|
0.519
|
0.067
|
0.311
|
0.148
|
0.098
|
0.587
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006733
|
1.000
|
1.000
|
Hsc_gene_17193.t1
|
Hsc_gene_17193.t1
|
— |
H2L002.1 Receptor-type guanylate cyclase gcy-7 [Caenorhabditis elegans]
|
AAG23825.1 guanylyl cyclase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004383|GO:0006182|GO:0009190|GO:0016849|GO:0035556
|
GO:0008150_0.939|GO:0005575_0.810|GO:0110165_0.776|GO:0009987_0.706|GO:0050896_0.660|GO:0003674_0.643|GO:0016020_0.609|GO:0032501_0.542|GO:0065007_0.532|GO:0005622_0.517
|
IPR001054+151-346_179-354_186-353_187-317+|IPR011009+56-156+|IPR011645+130-172+|IPR018297+294-317+|IPR029787+173-355_174-371+|IPR050401+46-354+
|
SM00044+151-346+
|
PF00211+179-354+Adenylate_and_Guanylate_cyclase_catalytic_domain|PF07701+130-172+Heme_NO_binding_associated
|
G3DSA:3.30.70.1230:FF:000015+174-368+Guanylate_cyclase
|
PTHR11920+46-354+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-71;381-383
|
1.000
|
72-380
|
9bcv_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
44110.230
|
7.690
|
7.000
|
31.593
|
10.183
|
50.914
|
49.086
|
17.493
|
14.099
|
44.648
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
159.307
|
2.397
|
6.720
|
8.640
|
3.996
|
5.278
|
22.601
|
8.960
|
3.084
|
672.685
|
385.713
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.719
|
— |
-1.149
|
— |
2.111
|
— |
1.477
|
-7.863
|
— |
-6.889
|
— | — |
No JSON data available for plots.