Hg_chrom2_TN10mRNA_3099
Organism: Heterodera glycines Gene Locus: chr2:5320009-5334129 Feature type: polypeptideProtein Sequence
Length: 1,920
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.569 | 1.55 | 0.843 | 0.395 | 1.571 | 1.162 | 0.403 | 0.964 | 1.435 | 1.534 | 1.657 | 1.777 | 1.635 | 0.541 | 0.744 | 0.923 | 0.649 | 0.702 | 1.282 | 0.751 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2960
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
LGEV,PKPS,RKRRK,KKILAKLNENSKKEKP,RRFRTFYAFVELWAKEKKL,SKNEKSKKEAQKEKEEKEVPNVKRDKK
|
— | — | — | — |
1-23
|
0.748
|
1.000
|
0.000
|
0.000
|
0.560
|
0.167
|
0.013
|
0.583
|
0.128
|
0.139
|
0.154
|
0.023
|
0.165
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001816
|
3.000
|
1.000
|
Hsc_gene_17194.t1
|
Hsc_gene_17194.t1
|
— | — |
XP_037915138.1 poly(A) polymerase gamma-like [Hermetia illucens]
|
WP_291632099
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.671|GO:0110165_0.668|GO:0008150_0.640|GO:0005622_0.628|GO:0003674_0.617|GO:0016020_0.615|GO:0043226_0.599|GO:0043229_0.583|GO:0043227_0.543|GO:0009987_0.521|GO:0043231_0.516
|
IPR007012+1770-1905+
|
— |
PF04928+1770-1905+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1767-1905+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1087-1209
|
2.000
|
1-1086;1210-1920
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
224410.080
|
8.287
|
28.500
|
30.573
|
12.031
|
52.188
|
47.812
|
16.510
|
14.062
|
38.594
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2950.281
|
30.161
|
1173.046
|
1086.999
|
314.134
|
33.034
|
38.924
|
134.639
|
10145.778
|
4244.043
|
6773.358
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.052
|
5.033
|
— |
-1.821
|
-3.235
|
— |
1.924
|
-1.650
|
— |
-3.043
|
-3.622
|
— | — |