Hg_chrom2_TN10mRNA_3104
Organism: Heterodera glycines Gene Locus: chr2:5358395-5360447 Feature type: polypeptideProtein Sequence
Length: 453
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 1.591 | 1.003 | 0.609 | 1.766 | 1.075 | 0.368 | 1.656 | 1.521 | 1.134 | 1.304 | 1.169 | 1.349 | 0.849 | 1.216 | 0.883 | 0.615 | 0.502 | 1.019 | 1.039 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2965
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.860
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKR,KWRKSRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.328
|
0.008
|
0.568
|
0.254
|
0.178
|
0.211
|
0.020
|
0.167
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006736
|
1.000
|
1.000
|
Hsc_gene_17199.t1
|
— | — | — |
KAK2386901.1 RING/U-box superfamily protein [Trifolium repens]
|
CAI9778569
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0003674_0.848|GO:0005575_0.805|GO:0008152_0.797|GO:0110165_0.795|GO:0044238_0.791|GO:0043170_0.784|GO:0009987_0.750|GO:0019538_0.735|GO:0003824_0.732|GO:0016020_0.725|GO:0043412_0.700|GO:0036211_0.694|GO:0016740_0.689|GO:0140096_0.689|GO:0043687_0.680|GO:0070647_0.680|GO:0016567_0.678|GO:0032446_0.678|GO:0005622_0.665|GO:0016746_0.661|GO:0016755_0.659|GO:0019787_0.659|GO:0004842_0.657|GO:0050896_0.654|GO:0043226_0.617|GO:0043229_0.596|GO:0043227_0.568|GO:0065007_0.554|GO:0043231_0.551|GO:0050789_0.544|GO:0050794_0.529
|
IPR001841+259-310_260-310+|IPR013083+245-320+
|
— |
PF13639+259-310+Ring_finger_domain
|
— |
PTHR45977+115-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
448-453
|
1.000
|
1-447
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
53279.260
|
6.560
|
0.500
|
33.996
|
13.024
|
54.967
|
45.033
|
17.881
|
16.115
|
40.397
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
199.721
|
218.387
|
10.928
|
278.420
|
89.371
|
7.249
|
4.671
|
31.720
|
223.549
|
465.836
|
361.999
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.550
|
0.213
|
4.779
|
-1.671
|
-3.608
|
— |
2.038
|
-2.623
|
— | — | — | — | — |
No JSON data available for plots.