Hg_chrom2_TN10mRNA_3110
Organism: Heterodera glycines Gene Locus: chr2:5391871-5393137 Feature type: polypeptideProtein Sequence
Length: 229
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.914 | 1.117 | 0.397 | 1.506 | 0.218 | 0.448 | 0.832 | 1.092 | 1.844 | 1.711 | 0.662 | 2.312 | 2.669 | 0.504 | 0.624 | 0.998 | 0.859 | 1.059 | 0.0 | 1.413 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2971
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
50-75
|
0.979
|
— | — | — | — |
0.000
|
— | — |
0.160
|
0.154
|
0.020
|
0.046
|
0.370
|
0.078
|
0.097
|
0.014
|
0.778
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001827
|
1.000
|
3.000
|
Hsc_gene_17206.t1;Hsc_gene_17206.t2;Hsc_gene_7026.t1
|
Hsc_gene_17206.t1;Hsc_gene_17206.t2;Hsc_gene_7026.t1
|
— | — |
KAF7632662.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019424+44-224+|IPR047130+40-221+
|
— |
PF10320+44-224+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+40-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-229
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
25453.410
|
8.919
|
11.500
|
13.100
|
16.594
|
31.878
|
68.122
|
9.607
|
3.493
|
48.035
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
108.267
|
2.301
|
5.677
|
19.439
|
11.060
|
1.866
|
2.631
|
4.223
|
9.675
|
448.712
|
260.553
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.943
|
1.884
|
-0.845
|
-2.550
|
— | — | — |
-5.663
|
— |
-5.196
|
— | — |
No JSON data available for plots.