SCN Proteipedia

Hg_chrom2_TN10mRNA_3111

Organism: Heterodera glycines Gene Locus: chr2:5393427-5396434 Feature type: polypeptide

Protein Sequence

Length: 565

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.864	1.111	0.837	0.244	1.298	1.044	0.653	1.327	1.534	1.363	1.234	1.978	1.377	0.681	1.047	0.834	0.754	0.885	1.089	0.781	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2972	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	Hsc_gene_17207	—	—	21-pJ2_J3	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	RRISNLHRRTMWKASRK	—	—	—	—	—	—	0.000	—	—	0.074	0.122	0.022	0.256	0.528	0.317	0.447	0.029	0.100	0.669

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006738	1.000	1.000	Hsc_gene_17207.t1	Hsc_gene_17207.t1	—	P51855.1 Glutathione synthetase [Mus musculus]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016874	GO:0008150_0.944\|GO:0003674_0.850\|GO:0009987_0.768\|GO:0008152_0.765\|GO:0005575_0.718\|GO:0110165_0.718\|GO:0050896_0.694\|GO:0044237_0.629\|GO:0009058_0.626\|GO:0044249_0.609\|GO:0003824_0.606\|GO:0006790_0.556\|GO:0006518_0.552\|GO:0006575_0.552\|GO:0006749_0.552\|GO:0006750_0.552\|GO:0019184_0.552\|GO:0042398_0.552\|GO:0043043_0.552\|GO:0043603_0.552\|GO:0043604_0.552\|GO:0044272_0.552\|GO:0005622_0.540\|GO:0016874_0.540\|GO:0004363_0.536\|GO:0016879_0.536\|GO:0016881_0.536\|GO:1904091_0.536\|GO:0016020_0.516\|GO:0042221_0.512	IPR004887+282-388+\|IPR005615+66-565_77-565_86-564+\|IPR014042+139-425+\|IPR014049+87-506+\|IPR014709+426-493+\|IPR016185+282-389+\|IPR037013+259-389+	—	PF03199+282-388+Eukaryotic_glutathione_synthase\|PF03917+86-564+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+77-565+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-565	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.667	64498.520	8.856	12.500	28.319	11.681	47.611	52.389	15.929	12.389	42.832

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	pink	1658.132	8.709	39.176	2905.823	1594.650	134.120	155.408	32.781	1927.727	3982.032	3101.616

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.941	8.248	6.318	-0.897	-3.557	—	-2.147	2.390	—	—	—	—	—

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