Hg_chrom2_TN10mRNA_3112
Organism: Heterodera glycines Gene Locus: chr2:5399089-5400168 Feature type: polypeptideProtein Sequence
Length: 171
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 1.904 | 1.489 | 0.403 | 1.072 | 1.2 | 0.766 | 1.462 | 1.17 | 0.79 | 1.506 | 0.344 | 1.949 | 0.675 | 0.358 | 0.585 | 0.671 | 1.063 | 0.45 | 1.376 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2973
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.407
|
0.597
|
0.136
|
0.626
|
0.125
|
0.473
|
0.135
|
0.149
|
0.235
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006739
|
1.000
|
1.000
|
Hsc_gene_17209.t1
|
Hsc_gene_17209.t1
|
— |
Q9SZ54.2 Putative glutathione peroxidase 7, chloroplastic [Arabidopsis thaliana]
|
CAD38524.1 putative glutathione peroxidase [Globodera rostochiensis]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979
|
GO:0008150_0.790|GO:0005575_0.765|GO:0110165_0.762|GO:0005622_0.704|GO:0005737_0.693|GO:0003674_0.653|GO:0009987_0.653|GO:0016020_0.646|GO:0043226_0.642|GO:0043229_0.629|GO:0043227_0.615|GO:0043231_0.601|GO:0050896_0.601|GO:0051716_0.536|GO:0003824_0.521|GO:0042221_0.519
|
IPR000889+1-171_2-171_7-168_11-163_12-120_30-47_66-82_131-140+|IPR013766+6-168+|IPR029759+32-47+|IPR036249+11-167+
|
— |
PF00255+12-120+Glutathione_peroxidase
|
G3DSA:3.40.30.10:FF:000025+3-169+Glutathione_peroxidase
|
PTHR11592+7-168+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-171
|
2v1m_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
19391.660
|
5.618
|
-2.500
|
29.240
|
15.205
|
50.292
|
49.708
|
14.620
|
14.620
|
50.292
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4413.458
|
42156.397
|
1207.434
|
460.375
|
257.849
|
423.712
|
676.461
|
229.644
|
225.254
|
2110.488
|
1302.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.359
|
-6.651
|
-1.279
|
-0.867
|
— | — | — |
1.697
|
-3.318
|
— | — | — | — |
No JSON data available for plots.