Hg_chrom2_TN10mRNA_3117
Organism: Heterodera glycines Gene Locus: chr2:5412650-5415464 Feature type: polypeptideProtein Sequence
Length: 451
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.006 | 1.959 | 0.806 | 0.918 | 0.185 | 1.308 | 0.924 | 0.998 | 1.232 | 1.468 | 0.403 | 1.435 | 1.047 | 0.768 | 0.498 | 1.457 | 1.163 | 0.84 | 0.853 | 1.239 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2978
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3117
|
2-pJ2_J3_J4_Female
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cytoplasm|extracellular
|
chloroplast
|
— | — | — |
48-70
|
0.987
|
1-19
|
0.985
|
1.000
|
0.000
|
0.000
|
0.269
|
0.138
|
0.160
|
0.502
|
0.279
|
0.545
|
0.267
|
0.007
|
0.254
|
0.751
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006742
|
1.000
|
1.000
|
Hsc_gene_17213.t2
|
Hsc_gene_17213.t1;Hsc_gene_17213.t2
|
— |
Q6XPZ3.1 Phospholipase A2 group XV [Canis lupus familiaris]
|
KAK6029862.1 Lecithin:cholesterol acyltransferase [Ostertagia ostertagi]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0008374
|
GO:0008150_0.739|GO:0005575_0.721|GO:0003674_0.718|GO:0110165_0.709|GO:0009987_0.670|GO:0003824_0.590|GO:0008152_0.572|GO:0016020_0.572|GO:0044238_0.550|GO:0044237_0.543|GO:0016740_0.542|GO:0016746_0.529|GO:0016747_0.519
|
IPR003386+168-339+|IPR029058+45-438_111-296_341-451+
|
— |
PF02450+168-339+Lecithin:cholesterol_acyltransferase
|
— |
PTHR11440+38-442+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.884
|
48562.990
|
6.915
|
2.500
|
12.639
|
11.086
|
43.459
|
56.541
|
7.095
|
5.543
|
58.758
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
633.943
|
5.719
|
10.485
|
629.067
|
2144.394
|
1444.499
|
938.677
|
135.824
|
18.093
|
769.184
|
447.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.640
|
6.005
|
1.737
|
-0.553
|
-0.614
|
-3.533
|
2.936
|
-5.576
|
5.313
|
— | — | — |