Hg_chrom2_TN10mRNA_3121
Organism: Heterodera glycines Gene Locus: chr2:5423482-5427515 Feature type: polypeptideProtein Sequence
Length: 734
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.76 | 1.141 | 0.991 | 0.752 | 1.158 | 1.013 | 0.6 | 1.499 | 0.999 | 1.362 | 1.507 | 1.042 | 1.173 | 0.734 | 1.362 | 1.051 | 0.782 | 0.991 | 0.629 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2982
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3121
|
— | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PTSKRWK,RRSTKEVLMNLGKKERRE,KKSAQTSSNDDKTSLKKGK,KKGKSKTEQKGEAKKRHKN,RKNPRKAAAPFQKRRERKT,GGGAGRKNPRKAAAPFQKRRERK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.904
|
0.126
|
0.009
|
0.230
|
0.071
|
0.009
|
0.050
|
0.018
|
0.030
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006744
|
1.000
|
1.000
|
Hsc_gene_17218.t2
|
Hsc_gene_17218.t1;Hsc_gene_17218.t2
|
— |
Q09622.1 Pumilio domain-containing protein 12 [Caenorhabditis elegans]
|
KAI1701985.1 CPL domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0008150_0.803|GO:0005575_0.718|GO:0110165_0.718|GO:0005622_0.675|GO:0016020_0.639|GO:0043226_0.634|GO:0043229_0.634|GO:0043227_0.566|GO:0009987_0.560|GO:0043231_0.535|GO:0043228_0.521|GO:0043232_0.521
|
IPR001313+202-237_217-239_238-273_243-273_378-391_392-427+|IPR011989+183-326_351-617+|IPR012959+478-618+|IPR016024+184-506+|IPR033133+173-552+|IPR040059+71-672+
|
SM00025+202-237_238-273_392-427+
|
PF00806+217-239_243-273_378-391+Pumilio-family_RNA_binding_repeat|PF08144+478-618+CPL_(NUC119)_domain
|
— |
PTHR13389+71-672+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-147;687-734
|
1.000
|
148-686
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
83236.680
|
9.981
|
42.000
|
32.016
|
9.537
|
52.997
|
47.003
|
19.619
|
12.398
|
46.594
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.