Hg_chrom2_TN10mRNA_3127
Organism: Heterodera glycines Gene Locus: chr2:5444922-5447964 Feature type: polypeptideProtein Sequence
Length: 452
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.54 | 1.749 | 0.925 | 0.153 | 1.733 | 0.964 | 0.316 | 1.549 | 1.475 | 0.957 | 2.782 | 1.041 | 1.168 | 0.553 | 0.587 | 0.948 | 0.798 | 0.268 | 1.191 | 1.106 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2988
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RKPKKAVDQLKPIKK,KKENPKFSDEKIAKK,KKTLKNWKLEKRALK,KKLNIHRTTLTKWKKE,KKHFGVNPKILYKWKVK,KRQHSHEEIAKIIKLYKK,RKGYSYKEKMKILRKYKQ,KKEFGLESRKGYSYKEKMK,YKEKMKILRKYKQLEKKNKEMSDKKIAEQLKINKKTLKNWKLEK
|
— | — | — | — |
1-24
|
0.925
|
0.998
|
0.000
|
0.000
|
0.786
|
0.075
|
0.019
|
0.356
|
0.016
|
0.015
|
0.021
|
0.003
|
0.077
|
0.209
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006747
|
1.000
|
1.000
|
Hsc_gene_17225.t1
|
Hsc_gene_17229.t1
|
— | — |
KAI3416901.1 hypothetical protein GPALN_002978 [Globodera pallida]
|
DBA00996
|
0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
77-182;416-452
|
2.000
|
1-76;183-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
53595.150
|
10.119
|
33.000
|
39.823
|
12.611
|
62.611
|
37.389
|
24.336
|
15.487
|
36.504
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |