Hg_chrom2_TN10mRNA_3131
Organism: Heterodera glycines Gene Locus: chr2:5462209-5466537 Feature type: polypeptideProtein Sequence
Length: 819
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 1.051 | 0.599 | 0.126 | 1.221 | 0.908 | 0.581 | 0.916 | 1.221 | 1.485 | 1.332 | 2.011 | 1.153 | 1.08 | 1.071 | 1.448 | 0.721 | 0.888 | 0.751 | 0.826 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2992
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKPR,RKRK,RKSK,KKAHNQLKREEKKWKD
|
— | — | — | — | — | — |
0.478
|
— | — |
0.334
|
0.149
|
0.201
|
0.082
|
0.117
|
0.053
|
0.149
|
0.171
|
0.339
|
0.907
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006748
|
1.000
|
1.000
|
Hsc_gene_19160.t1
|
Hsc_gene_19160.t1
|
— | — |
KAI1698881.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.956|GO:0008150_0.953|GO:0110165_0.949|GO:0032501_0.788|GO:0032502_0.772|GO:0048856_0.772|GO:0007275_0.741|GO:0009888_0.688|GO:0008544_0.670|GO:0018996_0.670|GO:0040002_0.670|GO:0042303_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0005576_0.557|GO:0005615_0.554
|
IPR006954+428-632+
|
— |
PF04870+428-632+Moulting_cycle
|
— |
PTHR21523+61-815+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-194;364-435
|
3.000
|
1-143;195-363;436-819
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
92388.950
|
10.112
|
35.500
|
26.496
|
9.768
|
49.084
|
50.916
|
15.873
|
10.623
|
45.421
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.