Hg_chrom2_TN10mRNA_3132
Organism: Heterodera glycines Gene Locus: chr2:5467953-5468610 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.648 | 0.732 | 0.573 | 1.086 | 0.919 | 1.615 | 0.937 | 1.575 | 1.225 | 1.064 | 0.597 | 1.39 | 1.531 | 0.454 | 0.964 | 1.912 | 0.645 | 0.477 | 0.606 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2993
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
Gland5|MT0123171#X12jg4659t1
|
Hsc_gene_1943;Hsc_gene_11271;Hsc_gene_11688;Hsc_gene_11689;Hsc_gene_1515;Hsc_gene_17202;Hsc_gene_19142;Hsc_gene_16881;Hsc_gene_16882;Hsc_gene_16883;Hsc_gene_17216;Hsc_gene_19127;Hsc_gene_17203;Hsc_gene_19143;Hsc_gene_24308
|
— | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
55-79
|
0.912
|
— | — |
0.002
|
— | — |
0.557
|
0.553
|
0.069
|
0.357
|
0.035
|
0.079
|
0.043
|
0.116
|
0.187
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003280
|
1.000
|
2.000
|
Hsc_gene_19567.t1;Hsc_gene_19567.t2
|
Hsc_gene_11687.t1;Hsc_gene_11688.t1;Hsc_gene_17189.t1;Hsc_gene_17190.t1;Hsc_gene_17219.t1;Hsc_gene_19761.t1;Hsc_gene_19764.t1;Hsc_gene_22700.t1;Hsc_gene_24309.t1
|
— | — |
AJR19773.1 esophageal gland-localized secretory protein 5 [Heterodera glycines]
|
KAK6379756
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
126-127
|
1.000
|
1-125
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
13460.160
|
7.267
|
2.000
|
20.472
|
9.449
|
47.244
|
52.756
|
11.811
|
8.661
|
54.331
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.