Hg_chrom2_TN10mRNA_3133
Organism: Heterodera glycines Gene Locus: chr2:5469093-5470052 Feature type: polypeptideProtein Sequence
Length: 187
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.492 | 0.622 | 0.681 | 2.397 | 0.535 | 1.234 | 0.764 | 2.406 | 1.188 | 1.012 | 0.81 | 1.258 | 1.188 | 0.72 | 0.327 | 2.139 | 0.526 | 0.729 | 0.823 | 0.157 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2994
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
Gland5|MT0123171#X12jg4659t1
|
Hsc_gene_1943;Hsc_gene_11271;Hsc_gene_11283;Hsc_gene_11284;Hsc_gene_11688;Hsc_gene_11689;Hsc_gene_1514;Hsc_gene_1515;Hsc_gene_17202;Hsc_gene_19142;Hsc_gene_16881;Hsc_gene_16882;Hsc_gene_16883;Hsc_gene_17216;Hsc_gene_19127;Hsc_gene_19128;Hsc_gene_17203;Hsc_gene_19143;Hsc_gene_24308
|
— | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
chloroplast
|
— | — | — |
14-35
|
0.995
|
1-24
|
0.994
|
1.000
|
0.000
|
0.000
|
0.415
|
0.157
|
0.010
|
0.309
|
0.081
|
0.183
|
0.087
|
0.057
|
0.173
|
0.391
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000083
|
13.000
|
3.000
|
Hsc_gene_1514.t1;Hsc_gene_1515.t1;Hsc_gene_1943.t1
|
Hsc_gene_11687.t1;Hsc_gene_11688.t1;Hsc_gene_14768.t1;Hsc_gene_1515.t1;Hsc_gene_16881.t1;Hsc_gene_16882.t1;Hsc_gene_16883.t1;Hsc_gene_17189.t1;Hsc_gene_17190.t1;Hsc_gene_17203.t1;Hsc_gene_17215.t1;Hsc_gene_17216.t1;Hsc_gene_17220.t1;Hsc_gene_19127.t1;Hsc_gene_19128.t1;Hsc_gene_19141.t1;Hsc_gene_19142.t1;Hsc_gene_19143.t1;Hsc_gene_19761.t1;Hsc_gene_19764.t1;Hsc_gene_22700.t1;Hsc_gene_24308.t1;Hsc_gene_24309.t1;Hsc_gene_4163.t1;Hsc_gene_4163.t2
|
— | — |
AJR19773.1 esophageal gland-localized secretory protein 5 [Heterodera glycines]
|
XP_016237253
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-187
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
19608.360
|
7.316
|
4.500
|
18.717
|
10.695
|
44.385
|
55.615
|
11.765
|
6.952
|
59.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |