Hg_chrom2_TN10mRNA_3143
Organism: Heterodera glycines Gene Locus: chr2:5499317-5501674 Feature type: polypeptideProtein Sequence
Length: 485
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.456 | 1.391 | 1.012 | 0.284 | 1.375 | 1.48 | 0.614 | 0.928 | 1.604 | 1.449 | 1.031 | 1.213 | 1.833 | 0.555 | 1.515 | 0.854 | 0.541 | 0.812 | 1.427 | 0.728 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3004
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm
|
chloroplast
|
RRKR,KKCTNVHNYYKKFRL
|
— | — |
49-74
|
0.935
|
1-26
|
0.897
|
0.999
|
0.000
|
0.000
|
0.426
|
0.329
|
0.048
|
0.702
|
0.242
|
0.300
|
0.225
|
0.028
|
0.148
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001677
|
2.000
|
2.000
|
Hsc_gene_16023.t1;Hsc_gene_19133.t1
|
Hsc_gene_19132.t1;Hsc_gene_19133.t1
|
— | — |
KAI1729841.1 histidine phosphatase superfamily (branch 1) domain-containing protein [Ditylenchus destructor]
|
ORY92279
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.841|GO:0005488_0.781|GO:0005515_0.754|GO:0003824_0.713|GO:0016787_0.684|GO:0140096_0.674|GO:0042802_0.671|GO:0016788_0.661|GO:0042803_0.656|GO:0046983_0.656|GO:0004721_0.650|GO:0004725_0.650|GO:0016791_0.650|GO:0042578_0.650|GO:0102531_0.650
|
IPR013078+252-341_252-428_253-431+|IPR029033+249-447_252-453+|IPR051710+252-431+
|
SM00855+252-428+
|
PF00300+253-431+Histidine_phosphatase_superfamily_(branch_1)
|
— |
PTHR16469+252-431+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-485
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
57043.320
|
8.132
|
6.500
|
29.897
|
12.784
|
50.928
|
49.072
|
16.082
|
13.814
|
38.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |