Hg_chrom2_TN10mRNA_3144
Organism: Heterodera glycines Gene Locus: chr2:5502646-5503322 Feature type: polypeptideProtein Sequence
Length: 142
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 0.655 | 0.64 | 1.457 | 0.587 | 1.264 | 1.174 | 1.761 | 1.408 | 0.761 | 0.64 | 1.243 | 1.565 | 0.813 | 1.725 | 2.012 | 0.462 | 0.64 | 1.083 | 0.207 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3005
|
— | — |
2.222
|
2.000
|
2.000
|
3.000
|
2.000
|
2.000
|
1.000
|
3.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
24A12|MT0123361#tn8jg13876t1
|
Hsc_gene_1943;Hsc_gene_11283;Hsc_gene_11284;Hsc_gene_11688;Hsc_gene_1514;Hsc_gene_1515;Hsc_gene_17202;Hsc_gene_19142;Hsc_gene_16881;Hsc_gene_16882;Hsc_gene_16883;Hsc_gene_17216;Hsc_gene_24308
|
— | — |
29-J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
35-75
|
0.997
|
9-53
|
0.993
|
— | — |
0.000
|
— | — |
0.198
|
0.404
|
0.273
|
0.159
|
0.056
|
0.070
|
0.164
|
0.244
|
0.150
|
0.431
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003282
|
1.000
|
2.000
|
Hsc_gene_14768.t1;Hsc_gene_17220.t1
|
Hsc_gene_11687.t1;Hsc_gene_11689.t1;Hsc_gene_1515.t1;Hsc_gene_16881.t1;Hsc_gene_16882.t1;Hsc_gene_16883.t1;Hsc_gene_17189.t1;Hsc_gene_17190.t1;Hsc_gene_17215.t1;Hsc_gene_19126.t1;Hsc_gene_19129.t1;Hsc_gene_19141.t1;Hsc_gene_1943.t1;Hsc_gene_19761.t1;Hsc_gene_19764.t1;Hsc_gene_22700.t1;Hsc_gene_24309.t1;Hsc_gene_4163.t1;Hsc_gene_4163.t2
|
— | — |
QPO14718.1 effector protein 24A12, partial [Heterodera glycines]
|
MEO7742218
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
116-142
|
1.000
|
1-115
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
15474.580
|
9.958
|
10.500
|
23.239
|
11.268
|
47.887
|
52.113
|
16.197
|
7.042
|
53.521
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
215.445
|
6.493
|
2.324
|
3.654
|
56.408
|
49.446
|
65.617
|
16.831
|
0.514
|
866.894
|
495.589
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.729
|
— | — |
3.910
|
— |
0.418
|
-1.665
|
2.107
|
-10.086
|
— |
-3.833
|
— | — |
No JSON data available for plots.