Hg_chrom2_TN10mRNA_3148
Organism: Heterodera glycines Gene Locus: chr2:5511650-5515407 Feature type: polypeptideProtein Sequence
Length: 597
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.247 | 0.896 | 0.883 | 0.751 | 1.173 | 1.16 | 0.838 | 1.675 | 0.931 | 1.652 | 0.584 | 1.379 | 0.744 | 0.676 | 1.265 | 1.005 | 0.659 | 1.294 | 0.387 | 0.394 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3009
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.591
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.498
|
0.310
|
0.013
|
0.678
|
0.067
|
0.285
|
0.119
|
0.431
|
0.134
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006756
|
1.000
|
1.000
|
Hsc_gene_19147.t1
|
Hsc_gene_19147.t1
|
— |
Q20502.1 Histidine ammonia-lyase [Caenorhabditis elegans]
|
KAI1711655.1 aromatic amino acid lyase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004397|GO:0005737|GO:0006548|GO:0016841
|
GO:0008150_0.784|GO:0003674_0.734|GO:0009987_0.689|GO:0008152_0.616|GO:0003824_0.589|GO:0044237_0.577
|
IPR001106+32-546_61-509_63-526+|IPR005921+56-561+|IPR008948+50-561+|IPR022313+191-207+|IPR024083+23-251+
|
— |
PF00221+63-526+Aromatic_amino_acid_lyase
|
G3DSA:1.10.275.10:FF:000005+53-250+Histidine_ammonia-lyase|G3DSA:1.20.200.10:FF:000003+251-563+Histidine_ammonia-lyase
|
PTHR10362+32-546+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-597
|
1gkm_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
64942.350
|
6.422
|
-1.000
|
25.293
|
7.873
|
44.724
|
55.276
|
13.400
|
11.893
|
51.759
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
694.880
|
436.883
|
196.280
|
686.916
|
2256.769
|
1646.596
|
731.217
|
1328.847
|
21.314
|
292.801
|
176.450
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.383
|
0.516
|
1.915
|
1.684
|
-0.439
|
-1.162
|
— |
-0.716
|
-3.957
|
5.214
|
3.113
|
— | — |
No JSON data available for plots.