Hg_chrom2_TN10mRNA_3149
Organism: Heterodera glycines Gene Locus: chr2:5517977-5520373 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.743 | 0.952 | 0.93 | 0.617 | 1.279 | 1.508 | 0.944 | 1.151 | 1.08 | 0.899 | 1.24 | 1.805 | 1.563 | 0.541 | 0.94 | 0.767 | 0.922 | 0.853 | 1.967 | 1.128 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3010
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — |
0.704
|
0.041
|
0.000
|
— |
0.299
|
0.350
|
0.032
|
0.216
|
0.349
|
0.083
|
0.231
|
0.011
|
0.251
|
0.741
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000785
|
4.000
|
2.000
|
Hsc_gene_19148.t1;Hsc_gene_19150.t1
|
Hsc_gene_19148.t1
|
— |
Q9Y2A9.2 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 [Homo sapiens]
|
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.942|GO:0008152_0.723|GO:0009987_0.710|GO:0044238_0.709|GO:0009058_0.697|GO:0003674_0.690|GO:0044237_0.576|GO:0044249_0.558|GO:0003824_0.554|GO:0005575_0.524|GO:0110165_0.524
|
IPR002659+75-322_119-311+
|
— |
PF01762+119-311+Galactosyltransferase
|
— |
PTHR11214+75-322+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-80
|
2.000
|
1-35;81-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
44896.980
|
7.407
|
4.500
|
27.877
|
14.322
|
48.849
|
51.151
|
15.090
|
12.788
|
44.757
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
skyblue
|
214.667
|
3.608
|
6.315
|
6.101
|
6.383
|
447.276
|
66.944
|
10.784
|
1.043
|
733.108
|
419.366
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
6.150
|
-2.729
|
-5.488
|
2.782
|
— | — | — | — | — |