Hg_chrom2_TN10mRNA_3150
Organism: Heterodera glycines Gene Locus: chr2:5521839-5524265 Feature type: polypeptideProtein Sequence
Length: 347
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 0.871 | 0.891 | 0.497 | 1.297 | 1.256 | 0.72 | 1.729 | 1.473 | 1.168 | 1.223 | 1.695 | 1.441 | 0.61 | 1.117 | 0.659 | 0.567 | 0.786 | 2.217 | 1.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3011
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.792
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
RRNKKFIVRFKNFRLKYR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.073
|
0.061
|
0.001
|
0.122
|
0.310
|
0.221
|
0.868
|
0.003
|
0.158
|
0.585
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001819
|
2.000
|
2.000
|
Hsc_gene_17177.t1;Hsc_gene_19149.t1
|
Hsc_gene_19149.t1
|
— |
Q9Y2A9.2 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 [Homo sapiens]
|
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.946|GO:0003674_0.749|GO:0008152_0.745|GO:0009987_0.741|GO:0009058_0.721|GO:0044238_0.707|GO:0044237_0.633|GO:0003824_0.619|GO:0044249_0.601|GO:0005575_0.558|GO:0110165_0.558|GO:0016740_0.554|GO:0016757_0.525|GO:0016758_0.525|GO:1901135_0.514
|
IPR002659+40-299_103-297+
|
— |
PF01762+103-297+Galactosyltransferase
|
— |
PTHR11214+40-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-347
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
40726.800
|
8.309
|
9.000
|
29.683
|
16.427
|
46.398
|
53.602
|
17.003
|
12.680
|
39.193
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
green
|
1750.180
|
67.651
|
749.430
|
399.543
|
112.083
|
1300.800
|
796.328
|
278.181
|
6849.036
|
1131.256
|
3581.733
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.242
|
2.424
|
-0.801
|
-1.866
|
3.551
|
-0.697
|
-2.325
|
1.658
|
2.486
|
-3.942
|
-3.241
|
— | — |
No JSON data available for plots.