Hg_chrom2_TN10mRNA_3155
Organism: Heterodera glycines Gene Locus: chr2:5536481-5542374 Feature type: polypeptideProtein Sequence
Length: 1,022
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 0.887 | 0.747 | 0.877 | 0.718 | 0.828 | 0.547 | 1.419 | 1.0 | 1.944 | 0.504 | 1.266 | 1.903 | 0.866 | 1.278 | 1.356 | 0.802 | 0.904 | 0.903 | 0.691 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3016
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — |
8-48
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.105
|
0.123
|
0.007
|
0.142
|
0.402
|
0.599
|
0.521
|
0.024
|
0.551
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001830
|
1.000
|
3.000
|
Hsc_gene_19154.t1;Hsc_gene_19154.t2;Hsc_gene_19154.t3
|
Hsc_gene_19154.t1;Hsc_gene_19154.t2;Hsc_gene_19154.t3
|
— |
Q0EEE2.1 Patched domain-containing protein 3 [Mus musculus]
|
KAI6235787.1 SSD domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.846|GO:0110165_0.846|GO:0071944_0.787|GO:0016020_0.782|GO:0005886_0.774|GO:0008150_0.735|GO:0009987_0.584|GO:0005622_0.545|GO:0043226_0.534
|
IPR000731+350-480_752-918+|IPR003392+51-919+|IPR051697+5-942+
|
— |
PF02460+51-919+Patched_family
|
— |
PTHR10796+5-942+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1022
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
114426.700
|
8.362
|
26.500
|
20.841
|
13.209
|
42.270
|
57.730
|
12.427
|
8.415
|
48.630
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
96.665
|
113.470
|
37.269
|
202.879
|
190.040
|
159.587
|
136.683
|
87.102
|
17.868
|
61.871
|
43.013
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.832
|
0.701
|
2.550
|
— | — | — |
-0.981
|
0.792
|
— | — | — | — | — |
No JSON data available for plots.