Hg_chrom2_TN10mRNA_3161
Organism: Heterodera glycines Gene Locus: chr2:5567192-5568952 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.907 | 0.533 | 1.084 | 0.475 | 0.688 | 1.176 | 0.874 | 2.294 | 1.325 | 0.744 | 0.765 | 1.619 | 1.656 | 0.353 | 1.217 | 1.18 | 0.827 | 1.112 | 2.823 | 1.349 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3022
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KKYEYHYERLKSRKC
|
11-34
|
0.938
|
— | — | — | — |
0.018
|
— | — |
0.348
|
0.478
|
0.048
|
0.307
|
0.336
|
0.104
|
0.280
|
0.046
|
0.210
|
0.726
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000785
|
4.000
|
2.000
|
Hsc_gene_19148.t1;Hsc_gene_19150.t1
|
Hsc_gene_19150.t1
|
— |
Q9Y2A9.2 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 [Homo sapiens]
|
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.921|GO:0008152_0.739|GO:0044238_0.703|GO:0009058_0.689|GO:0003674_0.643|GO:0009987_0.615|GO:0003824_0.570|GO:0044237_0.549|GO:0044249_0.509
|
IPR002659+40-167_40-183+
|
— |
PF01762+40-167+Galactosyltransferase
|
— |
PTHR11214+40-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
25075.440
|
8.278
|
7.000
|
25.688
|
18.807
|
45.872
|
54.128
|
15.596
|
10.092
|
47.248
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
8.641
|
0.000
|
0.636
|
0.000
|
0.233
|
0.627
|
5.681
|
0.419
|
0.514
|
34.569
|
19.974
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.193
|
— |
3.921
|
— | — |
-6.896
|
— | — |
No JSON data available for plots.