Hg_chrom2_TN10mRNA_3163
Organism: Heterodera glycines Gene Locus: chr2:5578963-5582208 Feature type: polypeptideProtein Sequence
Length: 394
(Signal peptide: 1-31)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.59 | 1.712 | 1.384 | 1.663 | 1.184 | 1.041 | 0.604 | 0.761 | 1.128 | 1.029 | 1.307 | 1.941 | 1.481 | 0.927 | 0.622 | 1.015 | 0.957 | 0.461 | 1.562 | 0.448 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3024
|
— | — |
0.778
|
1.000
|
— |
1.000
|
— | — |
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-31
|
0.837
|
0.566
|
1.000
|
1.000
|
0.195
|
0.038
|
0.008
|
0.245
|
0.247
|
0.357
|
0.312
|
0.020
|
0.650
|
0.383
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003285
|
1.000
|
2.000
|
Hsc_gene_26623.t1;Hsc_gene_26626.t1
|
— | — | — | — |
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.965|GO:0009987_0.918|GO:0032501_0.819|GO:0032502_0.807|GO:0071840_0.805|GO:0048856_0.801|GO:0016043_0.798|GO:0007275_0.774|GO:0022414_0.713|GO:0009653_0.711|GO:0061024_0.709|GO:0003006_0.692|GO:0061025_0.682|GO:0010256_0.678|GO:0007009_0.676|GO:0007548_0.676|GO:0045026_0.674|GO:0018996_0.670|GO:0022404_0.670|GO:0042303_0.670|GO:0042395_0.670|GO:0045138_0.670|GO:0046661_0.670|GO:0090598_0.670
|
IPR006149+161-204+
|
— |
PF01683+161-204+EB_module
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
296-394
|
1.000
|
1-295
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.563
|
44743.640
|
4.934
|
-9.000
|
27.919
|
10.406
|
52.284
|
47.716
|
13.198
|
14.721
|
50.761
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
36.269
|
1.996
|
3.564
|
7.390
|
12.997
|
13.995
|
5.062
|
2.493
|
4.146
|
137.756
|
80.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.754
|
1.158
|
0.785
|
— |
-1.459
|
-2.596
|
— |
-5.214
|
— | — | — | — |