Hg_chrom2_TN10mRNA_3167
Organism: Heterodera glycines Gene Locus: chr2:5626203-5628098 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.69 | 1.577 | 0.539 | 1.169 | 0.777 | 0.978 | 0.303 | 1.907 | 1.13 | 1.546 | 0.963 | 1.246 | 1.648 | 1.304 | 1.297 | 1.029 | 0.764 | 0.706 | 3.259 | 0.374 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3028
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.407
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRGKEIEKCSRRPAK
|
— | — | — | — | — | — |
0.080
|
— | — |
0.109
|
0.318
|
0.014
|
0.278
|
0.134
|
0.054
|
0.061
|
0.010
|
0.150
|
0.680
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI6223535.1 Laminin subunit beta-1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.905|GO:0008150_0.778|GO:0009987_0.723|GO:0016020_0.710|GO:0071944_0.705|GO:0005622_0.698|GO:0003674_0.685|GO:0043226_0.659|GO:0043229_0.659|GO:0043227_0.638|GO:0043231_0.629|GO:0032991_0.626|GO:0005737_0.619|GO:0032501_0.612|GO:0032502_0.596|GO:0048856_0.596|GO:0005576_0.581|GO:0007275_0.573|GO:0071840_0.565|GO:0016043_0.563|GO:0048731_0.561|GO:0030154_0.557|GO:0048869_0.557|GO:0030312_0.549|GO:0048468_0.543|GO:0005604_0.540|GO:0031012_0.540|GO:0043256_0.540|GO:0062023_0.540|GO:0007399_0.531|GO:0065007_0.531|GO:0022008_0.527|GO:0048699_0.521|GO:0030182_0.520|GO:0030030_0.516|GO:0048666_0.516|GO:0050789_0.516|GO:0120036_0.516|GO:0031175_0.513
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
27603.090
|
9.972
|
16.500
|
24.153
|
15.254
|
46.610
|
53.390
|
16.525
|
7.627
|
44.915
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
75.447
|
1.376
|
17.234
|
4.202
|
1.959
|
8.531
|
3.045
|
8.442
|
2.747
|
311.226
|
179.020
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.424
|
— |
-1.926
|
— |
2.130
|
-1.471
|
— |
-1.326
|
-6.907
|
— |
-7.062
|
— | — |
No JSON data available for plots.