Hg_chrom2_TN10mRNA_3170
Organism: Heterodera glycines Gene Locus: chr2:5631462-5632666 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.507 | 1.292 | 1.122 | 0.639 | 1.543 | 0.791 | 0.294 | 1.543 | 1.783 | 1.084 | 0.374 | 1.816 | 0.686 | 1.306 | 1.386 | 0.617 | 1.113 | 0.748 | 0.0 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3031
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.476
|
0.445
|
0.017
|
0.510
|
0.090
|
0.170
|
0.090
|
0.266
|
0.187
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006764
|
1.000
|
1.000
|
Hsc_gene_19120.t1
|
Hsc_gene_19120.t1
|
— |
O62252.1 MIP18 family protein F45G2.10 [Caenorhabditis elegans]
|
KAI1729883.1 iron-sulfur cluster assembly protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0106035
|
GO:0008150_0.827|GO:0009987_0.752|GO:0005575_0.751|GO:0110165_0.745|GO:0005622_0.686|GO:0043226_0.606|GO:0043229_0.596|GO:0016020_0.565|GO:0005737_0.550|GO:0071840_0.533|GO:0016043_0.527|GO:0008152_0.502
|
IPR002744+39-108+|IPR034904+30-123_35-137+|IPR039796+2-158+
|
— |
PF01883+39-108+Iron-sulfur_cluster_assembly_protein
|
G3DSA:3.30.300.130:FF:000005+30-123+Mitotic_spindle-associated_mmxd_complex_subunit
|
PTHR12377+2-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-162
|
6tc0_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
17979.350
|
4.630
|
-7.500
|
27.778
|
7.407
|
47.531
|
52.469
|
12.346
|
15.432
|
51.852
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1043.909
|
1866.310
|
1091.406
|
637.471
|
693.439
|
649.833
|
1414.260
|
970.122
|
1285.227
|
857.117
|
1040.593
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.004
|
-1.687
|
-0.666
|
— | — |
1.134
|
0.472
|
0.688
|
— | — | — | — | — |
No JSON data available for plots.