Hg_chrom2_TN10mRNA_3171
Organism: Heterodera glycines Gene Locus: chr2:5632891-5634116 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.069 | 1.069 | 1.149 | 0.396 | 1.916 | 0.589 | 0.753 | 1.724 | 1.022 | 1.476 | 0.697 | 1.014 | 0.958 | 0.332 | 1.525 | 0.575 | 1.036 | 1.045 | 0.442 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3032
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.527
|
0.204
|
0.052
|
0.507
|
0.073
|
0.096
|
0.094
|
0.083
|
0.044
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003275
|
2.000
|
1.000
|
Hsc_gene_19119.t1
|
Hsc_gene_19119.t1
|
— |
Q09527.2 Adenylate kinase isoenzyme 6 homolog [Caenorhabditis elegans]
|
KAI1714168.1 AAA domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004017|GO:0005524|GO:0016887
|
GO:0008150_0.841|GO:0005575_0.759|GO:0110165_0.759|GO:0009987_0.747|GO:0005622_0.697|GO:0003674_0.664|GO:0008152_0.603|GO:0016020_0.589|GO:0044237_0.575|GO:0043226_0.570|GO:0009058_0.558|GO:0043229_0.548|GO:0043227_0.510|GO:0003824_0.503|GO:0044238_0.502
|
IPR020618+3-171_6-173+|IPR027417+2-174_6-162+
|
— |
PF13238+8-129+AAA_domain
|
G3DSA:3.40.50.300:FF:000372+1-174+Adenylate_kinase_isoenzyme_6_homolog
|
PTHR12595+3-171+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-174
|
1rkb_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
19678.120
|
4.856
|
-7.000
|
33.333
|
10.345
|
50.575
|
49.425
|
15.517
|
17.816
|
46.552
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1471.532
|
1976.512
|
948.967
|
987.680
|
1000.226
|
893.825
|
1505.066
|
1124.758
|
2216.588
|
1611.622
|
1870.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.288
|
-1.138
|
0.167
|
— |
-0.147
|
0.763
|
— |
0.564
|
— | — | — | — | — |
No JSON data available for plots.