Hg_chrom2_TN10mRNA_3172
Organism: Heterodera glycines Gene Locus: chr2:5634382-5635388 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.24 | 1.55 | 0.848 | 0.23 | 0.889 | 0.855 | 0.714 | 0.667 | 0.889 | 1.802 | 0.505 | 2.353 | 0.37 | 1.154 | 1.769 | 0.952 | 0.874 | 1.212 | 0.0 | 0.196 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3033
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.491
|
0.281
|
0.043
|
0.540
|
0.068
|
0.140
|
0.137
|
0.124
|
0.165
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006765
|
1.000
|
1.000
|
Hsc_gene_19118.t1
|
Hsc_gene_19118.t1
|
— | — |
KAF7638322.1 Adenylate kinase isoenzyme 6-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.900|GO:0005575_0.885|GO:0110165_0.873|GO:0009987_0.848|GO:0003674_0.813|GO:0005622_0.807|GO:0016020_0.801|GO:0065007_0.793|GO:0050789_0.783|GO:0008152_0.782|GO:0005488_0.771|GO:0050794_0.766|GO:0009058_0.760|GO:0044237_0.760|GO:0044238_0.754|GO:0043226_0.746|GO:0043170_0.744|GO:0043229_0.743|GO:0005737_0.740|GO:0044249_0.740|GO:0009059_0.731|GO:0010467_0.729|GO:0005515_0.728|GO:0006139_0.728|GO:0034654_0.722|GO:0019222_0.720|GO:0031323_0.720|GO:0048518_0.719|GO:0080090_0.717|GO:0060255_0.713|GO:0043227_0.712|GO:0048519_0.712|GO:0048522_0.712|GO:0051179_0.710|GO:0090304_0.710|GO:0016070_0.709|GO:0019538_0.709|GO:0051234_0.707|GO:0141187_0.707|GO:0009889_0.706|GO:0032774_0.706|GO:0031326_0.705|GO:0010468_0.704|GO:0010556_0.704|GO:0048523_0.704|GO:0006810_0.701|GO:0043231_0.700|GO:0009893_0.697|GO:0019219_0.696|GO:0031325_0.696|GO:0010604_0.695|GO:0097159_0.695|GO:0006351_0.693|GO:0009891_0.693|GO:0051252_0.693|GO:0031328_0.692|GO:0003824_0.690|GO:0006355_0.690|GO:2001141_0.690|GO:0010557_0.689|GO:0071705_0.687|GO:0006793_0.686|GO:0006796_0.686|GO:0009892_0.686|GO:0043412_0.685|GO:0010605_0.684|GO:0031324_0.684|GO:0045935_0.684|GO:0033036_0.683|GO:0036211_0.683|GO:0051246_0.683|GO:0051254_0.683|GO:0065009_0.681|GO:0003676_0.680|GO:0045893_0.680|GO:1902680_0.680|GO:0006366_0.679|GO:0050790_0.679|GO:0006357_0.678|GO:0006396_0.678|GO:0051248_0.676|GO:0016310_0.675|GO:0019220_0.675|GO:0031399_0.675|GO:0042325_0.675|GO:0045944_0.675|GO:0051174_0.675|GO:0001932_0.674|GO:0006399_0.674|GO:0006468_0.674|GO:0044092_0.674|GO:0010563_0.673|GO:0045936_0.673|GO:0000394_0.670|GO:0001933_0.670|GO:0004672_0.670|GO:0006388_0.670|GO:0006403_0.670|GO:0006469_0.670|GO:0008033_0.670|GO:0008380_0.670|GO:0015931_0.670|GO:0016301_0.670|GO:0016740_0.670|GO:0016772_0.670|GO:0016773_0.670|GO:0031400_0.670|GO:0033673_0.670|GO:0042326_0.670|GO:0042802_0.670|GO:0043086_0.670|GO:0043549_0.670|GO:0045859_0.670|GO:0050657_0.670|GO:0050658_0.670|GO:0051236_0.670|GO:0051338_0.670|GO:0051348_0.670|GO:0140096_0.670|GO:0003723_0.667|GO:0019899_0.665|GO:0000993_0.650|GO:0001098_0.650|GO:0001099_0.650|GO:0043175_0.650|GO:0070063_0.650|GO:0032991_0.639|GO:0005634_0.615|GO:0043228_0.614|GO:0043232_0.614|GO:0031974_0.576|GO:0043233_0.576|GO:0070013_0.574|GO:0031981_0.567|GO:1902494_0.560|GO:0005654_0.556|GO:0140535_0.553|GO:0005856_0.552|GO:0015630_0.548|GO:0005815_0.545|GO:0005813_0.540|GO:0005814_0.540|GO:0005819_0.540|GO:0048471_0.540|GO:0072669_0.540|GO:0072686_0.540
|
IPR019265+14-150_28-150+
|
— |
PF10036+14-150+RNA_transcription,_translation_and_transport_factor_protein
|
— |
PTHR15924+28-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
16267.800
|
9.934
|
4.000
|
23.333
|
3.333
|
45.333
|
54.667
|
13.333
|
10.000
|
54.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
394.608
|
630.533
|
539.654
|
779.535
|
936.297
|
760.300
|
416.659
|
295.856
|
66.546
|
41.939
|
52.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.454
|
0.169
|
0.639
|
0.233
|
-0.285
|
-0.860
|
-1.464
|
0.633
|
— | — |
4.575
|
— | — |
No JSON data available for plots.