Hg_chrom2_TN10mRNA_3173
Organism: Heterodera glycines Gene Locus: chr2:5635844-5638698 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 0.96 | 1.251 | 1.107 | 1.3 | 1.176 | 0.655 | 0.229 | 0.917 | 0.93 | 0.765 | 1.349 | 1.656 | 0.529 | 1.498 | 1.245 | 0.902 | 1.043 | 1.059 | 0.54 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3034
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.481
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — |
4-36
|
0.943
|
— | — | — | — |
0.000
|
— | — |
0.222
|
0.236
|
0.018
|
0.394
|
0.319
|
0.599
|
0.592
|
0.023
|
0.233
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006766
|
1.000
|
1.000
|
Hsc_gene_19117.t1
|
Hsc_gene_19117.t1
|
— |
G4MYS1.1 Ypt/Rab-type GTPase ypt7 [Pyricularia oryzae 70-15]
|
KAK5979861.1 Rab small monomeric gtpase [Trichostrongylus colubriformis]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.933|GO:0110165_0.932|GO:0005622_0.831|GO:0016020_0.825|GO:0005737_0.784|GO:0043226_0.767|GO:0043229_0.742|GO:0008150_0.740|GO:0071944_0.703|GO:0043227_0.699|GO:0005886_0.689|GO:0009987_0.670|GO:0043231_0.668|GO:0005773_0.666|GO:0006810_0.519|GO:0051179_0.519|GO:0051234_0.519|GO:0012505_0.514|GO:0065007_0.511
|
IPR001806+2-218_10-179_11-182+|IPR005225+10-175+|IPR027417+1-194_5-185+
|
SM00173+6-182+|SM00174+11-182+|SM00175+9-182+|SM00176+14-217+
|
PF00071+10-179+Ras_family
|
G3DSA:3.40.50.300:FF:000086+1-199+Ras-related_small_GTPase
|
PTHR47981+1-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
217-218
|
1.000
|
1-216
|
1vg9_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
24484.560
|
4.863
|
-4.500
|
27.523
|
9.633
|
50.459
|
49.541
|
12.844
|
14.679
|
52.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
paleturquoise
|
580.177
|
495.398
|
645.159
|
621.993
|
637.016
|
661.217
|
683.589
|
667.339
|
383.859
|
595.988
|
505.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.152
|
0.191
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.