Hg_chrom2_TN10mRNA_3175
Organism: Heterodera glycines Gene Locus: chr2:5645473-5655169 Feature type: polypeptideProtein Sequence
Length: 1,663
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.594 | 1.552 | 0.7 | 0.435 | 2.145 | 1.079 | 0.394 | 0.992 | 1.563 | 1.406 | 1.731 | 1.769 | 1.754 | 0.382 | 0.749 | 0.833 | 0.572 | 0.519 | 1.295 | 0.725 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3036
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
nucleus
|
— |
KKEKEEEKEEEKEDKK,RRAMAKSSSPIERLRGR,KKLKFESNVAFQLRKMRI,RNETNGKKNKKRKMQKRKKKEEDKKEQTEEEKEEEKETKEKEKEYKKEQTGEEKEEEKEKKEEEKEDKKEKE
|
— | — | — | — | — | — |
0.473
|
— | — |
0.466
|
0.125
|
0.007
|
0.355
|
0.176
|
0.127
|
0.133
|
0.051
|
0.221
|
0.462
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001832
|
1.000
|
3.000
|
Hsc_gene_19762.t1;Hsc_gene_19765.t1;Hsc_gene_19766.t1
|
Hsc_gene_19762.t1;Hsc_gene_19765.t1;Hsc_gene_19766.t1;Hsc_gene_19767.t1;Hsc_gene_19767.t2
|
— | — |
KAI3420159.1 hypothetical protein GPALN_003481 [Globodera pallida]
|
WP_237183828
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR033305+1101-1484+
|
— | — | — |
PTHR23053+1101-1484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1340-1490
|
2.000
|
1-1339;1491-1663
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
196300.390
|
6.053
|
-10.500
|
33.794
|
12.447
|
53.999
|
46.001
|
17.078
|
16.717
|
34.937
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
502.241
|
2.287
|
10.721
|
669.415
|
146.789
|
34.111
|
6.286
|
5.654
|
499.158
|
1494.710
|
1068.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.999
|
8.052
|
6.072
|
-2.220
|
-2.092
|
-2.430
|
-2.709
|
— | — | — |
-3.176
|
— | — |
No JSON data available for plots.