Hg_chrom2_TN10mRNA_3176
Organism: Heterodera glycines Gene Locus: chr2:5656025-5664802 Feature type: polypeptideProtein Sequence
Length: 1,415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 1.561 | 0.283 | 0.39 | 1.001 | 2.664 | 0.681 | 0.247 | 0.314 | 1.07 | 1.917 | 1.247 | 0.137 | 2.147 | 2.365 | 0.414 | 0.684 | 0.332 | 0.217 | 1.122 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3037
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KKPQLYNQRKRRKLM,RKLMEKPQLYNQQKRQNR,RKSRKLMEKPQLYNQQKRR,RKLMEKPQLYNQQKRRNLR,KRRNLRKKPQLYNQRKSRK,RRNLRKKPQLYNQRKSRKL,RKSRNLLKKPQLYNQRKSR,RKSRNLMEKPQLYNQRKSR,RKSRKLMEKPQLYNQRKSR,RKRRKLMEKPQLYNQRKRR,KRRKLMEKPQLYNQRKRRK,RRKLMEKPQLYNQRKRRKL,KRRKLMEKPQLYNQRKSRK,RRKLMEKPQLYNQRKSRKL,RKSRKLMEKPQLYNQRKRR,RKLMEKPQLYNQRKRRKLM,RKRRKLMEKPQLYNQRKSR,KRRKLMEKPQLYNQRKSRN,RKSRNLLKKPQLYNQRKRR,RKRRKLMEKPQLYNQRKRQ,KRRKLMEKPQLYNQRKRQN,RKRQNLLEKPQLYNQRKSR,KRQNLLEKPQLYNQRKSRN,RKSRNLLKMPQLYKQRKRR,RKRRNLLKKPQLYNQRKRR,KRRNLLKKPQLYNQRKRRN,RRNLLKKPQLYNQRKRRNP,KKPQLYNQRKRRNPRKKPQ,KRRKPRKKPQLYNQQKRRN,RRKPRKKPQLYNQQKRRNP,RKPRKKPQLYNQQKRRNPR,KRRNPRKKPQLYNQQKRRN,RRNPRKKPQLYNQQKRRNP,RKHPNLLNKPQLYNQRKRR,RKRRNPRKKPQLYNQRKRQ,KRRNPRKKPQLYNQRKRQN,RKRQNLMKKPQLYKQRKRQ,KRQNLMKKPQLYKQRKRQN,RKRQNLLKKPQLYKQRKRR,KRQNLLKKPQLYKQRKRRN,KKPQLYKQRKRRNPRKKPQ,RKRRNPRKKPQLYNLRKRR,KRRNPRKKPQLYNLRKRRK,RRNPRKKPQLYNLRKRRKP,RKKPQLYNLRKRRKPRKKP,KKPQLYNLRKRRKPRKKPQ,RKRRKPRKKPQLYNQQKRR,KRRKPRKKPQLYNQQKRRM,RRKPRKKPQLYNQQKRRMP,RKPRKKPQLYNQQKRRMPR,RKKPQLYNQQKRRMPRKKP,KKPQLYNQQKRRMPRKKPQ,KRRNPRKKPQLYNQQKRRK,RRNPRKKPQLYNQQKRRKP,RKKPQLYNQQKRRKPRKKP,KKPQLYNQQKRRKPRKKPR,KKPRLYNQRKRRKPRKKPR,RKRRKPRKKPRLYNQRKRR,KRRKPRKKPRLYNQRKRRK,RRKPRKKPRLYNQRKRRKP,RKPRKKPRLYNQRKRRKPR,RKKPRLYNQRKRRKPRKKP,KKPRLYNQRKRRKPRKKPQ,RKHPNLLNKPQLYNQRKCR,RKCRNPRKKPQLYNQQKRRNPRKKPQLYNLQKRRNPRKKPQLYNLRKRRMPRKKPQLYNQQKRRNPRNKPQLYNQRKRRNPRKKPQLYNLQKRRNPRKKP
|
— | — | — | — | — | — |
0.004
|
— | — |
0.184
|
0.018
|
0.006
|
0.312
|
0.114
|
0.123
|
0.122
|
0.001
|
0.484
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003287
|
1.000
|
2.000
|
Hsc_gene_19115.t1;Hsc_gene_19115.t2
|
Hsc_gene_19115.t1;Hsc_gene_19115.t2
|
— | — |
KAI1721757.1 cuticle collagen dpy-5 [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+59-111_62-111+|IPR008160+207-258_237-293_281-338+|IPR050632+68-345+
|
SM01088+59-111+
|
PF01391+207-258_237-293_281-338+Collagen_triple_helix_repeat_(20_copies)|PF01484+62-111+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+68-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-1415
|
1.000
|
1-148
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
163722.670
|
11.532
|
239.500
|
32.297
|
5.088
|
56.466
|
43.534
|
24.735
|
7.562
|
42.827
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1420.505
|
9.710
|
32.070
|
9.813
|
718.094
|
14606.297
|
5.994
|
117.110
|
21.253
|
386.610
|
230.028
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.495
|
— |
-1.600
|
6.163
|
4.362
|
-11.244
|
-7.076
|
-4.142
|
— | — | — | — | — |
No JSON data available for plots.