Hg_chrom2_TN10mRNA_3178
Organism: Heterodera glycines Gene Locus: chr2:5668542-5669223 Feature type: polypeptideProtein Sequence
Length: 151
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.539 | 0.616 | 0.482 | 0.685 | 0.773 | 2.038 | 1.025 | 2.318 | 1.913 | 1.163 | 0.602 | 2.727 | 1.472 | 1.528 | 0.946 | 0.946 | 0.977 | 0.602 | 0.509 | 0.39 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3039
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.669
|
0.304
|
0.114
|
0.700
|
0.132
|
0.245
|
0.070
|
0.003
|
0.044
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001833
|
2.000
|
2.000
|
Hsc_gene_19130.t1;Hsc_gene_25623.t1
|
Hsc_gene_19130.t1;Hsc_gene_25623.t1
|
— |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAJ1370147.1 Serine/threonine-protein phosphatase PP1-gamma, variant 2 [Parelaphostrongylus tenuis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.767|GO:0005575_0.748|GO:0110165_0.691|GO:0009987_0.649|GO:0005622_0.626|GO:0003674_0.610|GO:0005737_0.565|GO:0016020_0.525|GO:0065007_0.508
|
IPR004843+15-100+|IPR006186+1-150_5-31_35-62_91-111_113-129+|IPR029052+5-150_15-149+|IPR050341+15-143+
|
SM00156+1-150+
|
PF00149+15-100+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+15-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
151-151
|
1.000
|
1-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
16838.540
|
8.316
|
5.500
|
20.530
|
11.921
|
43.709
|
56.291
|
13.245
|
7.285
|
45.033
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
74.534
|
7.329
|
3.339
|
10.799
|
19.869
|
92.823
|
42.411
|
400.762
|
3.987
|
106.598
|
62.622
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.370
|
— |
1.806
|
0.851
|
2.234
|
-1.118
|
1.996
|
-3.092
|
-5.006
|
— | — | — | — |
No JSON data available for plots.