Hg_chrom2_TN10mRNA_3185
Organism: Heterodera glycines Gene Locus: chr2:5683765-5686054 Feature type: polypeptideProtein Sequence
Length: 279
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 0.917 | 1.043 | 0.618 | 1.314 | 1.011 | 0.853 | 1.434 | 1.274 | 1.259 | 0.815 | 2.319 | 1.493 | 0.758 | 1.682 | 0.87 | 0.764 | 0.815 | 0.551 | 0.422 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3045
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRLFDGILRFRKTLR
|
5-25
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.353
|
0.519
|
0.030
|
0.514
|
0.071
|
0.188
|
0.099
|
0.105
|
0.131
|
0.383
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006768
|
1.000
|
1.000
|
Hsc_gene_19108.t1
|
Hsc_gene_19108.t1
|
— |
Q22460.1 Beta carbonic anhydrase 1 [Caenorhabditis elegans]
|
KAF7639475.1 Carbonic anhydrase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0005575_0.798|GO:0110165_0.791|GO:0005622_0.754|GO:0003674_0.595|GO:0043226_0.590|GO:0005737_0.586|GO:0043229_0.573|GO:0008150_0.515|GO:0016020_0.503
|
IPR001765+4-242_30-232_37-228+|IPR036874+1-238_2-245+
|
SM00947+30-232+
|
PF00484+37-228+Carbonic_anhydrase
|
— |
PTHR11002+4-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
253-279
|
1.000
|
1-252
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
31691.320
|
7.427
|
4.000
|
30.108
|
10.394
|
48.746
|
51.254
|
16.487
|
13.620
|
45.161
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
721.918
|
263.205
|
1118.599
|
456.877
|
1255.255
|
1325.302
|
1665.401
|
1393.517
|
111.179
|
270.698
|
202.333
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.859
|
0.658
|
-1.184
|
1.426
|
— |
0.342
|
— |
0.401
|
— | — | — | — | — |
No JSON data available for plots.