SCN Proteipedia

Hg_chrom2_TN10mRNA_3187

Organism: Heterodera glycines Gene Locus: chr2:5694410-5703919 Feature type: polypeptide

Protein Sequence

Length: 1,316

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.857	1.025	0.76	0.681	0.899	1.364	0.678	1.102	1.385	1.366	0.518	1.475	1.625	0.731	1.194	1.248	0.959	1.013	1.52	0.715	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3047	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane\|lysosome_vacuole	—	KRRR	—	—	13-53	0.954	—	—	0.000	—	—	0.069	0.095	0.023	0.145	0.526	0.668	0.578	0.008	0.582	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003289	2.000	1.000	Hsc_gene_19105.t1	Hsc_gene_19105.t1;Hsc_gene_21611.t1;Hsc_gene_21611.t2	—	Q9U280.3 Phospholipid-transporting ATPase tat-1 [Caenorhabditis elegans]	KAI1710667.1 cation transport ATPase (P-type) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0000287\|GO:0005215\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0016887\|GO:0140326	GO:0005575_0.888\|GO:0110165_0.888\|GO:0005886_0.880\|GO:0016020_0.880\|GO:0071944_0.880\|GO:0008150_0.878\|GO:0009987_0.861\|GO:0065007_0.820\|GO:0006810_0.764\|GO:0051179_0.764\|GO:0051234_0.764\|GO:0043226_0.699\|GO:0005622_0.675\|GO:0003674_0.639\|GO:0043229_0.634\|GO:0065008_0.625\|GO:0043227_0.610\|GO:0005737_0.587\|GO:0005773_0.587\|GO:0043231_0.587\|GO:0012505_0.562\|GO:0005215_0.556\|GO:0016043_0.542\|GO:0071840_0.542\|GO:0033036_0.538	IPR001757+778-889+\|IPR006539+61-454_455-1085+\|IPR008250+155-295+\|IPR018303+426-432+\|IPR023214+661-846+\|IPR023298+59-1081+\|IPR023299+431-622_499-660+\|IPR032630+834-1084+\|IPR032631+57-113+\|IPR036412+412-850+\|IPR044492+407-857+	—	PF13246+485-587+Cation_transport_ATPase_(P-type)\|PF16209+57-113+Phospholipid-translocating_ATPase_N-terminal\|PF16212+834-1084+Phospholipid-translocating_P-type_ATPase_C-terminal	G3DSA:2.70.150.10:FF:000021+126-300+Phospholipid-transporting_ATPase\|G3DSA:3.40.50.1000:FF:000190+657-844+Phospholipid-transporting_ATPase	PTHR24092+36-1121+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1134-1316	1.000	1-1133	9omv_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.691	148161.760	7.145	10.500	21.049	12.462	45.365	54.635	11.474	9.574	48.708

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	16826.399	4204.342	4327.939	3080.706	3428.095	3593.083	4646.237	5098.384	81706.972	1693.220	35984.828

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.188	-0.586	-0.382	0.122	—	0.381	0.403	—	—	—	—	—	—

No JSON data available for plots.

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