Hg_chrom2_TN10mRNA_3189
Organism: Heterodera glycines Gene Locus: chr2:5706832-5708208 Feature type: polypeptideProtein Sequence
Length: 303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 0.998 | 0.54 | 0.91 | 0.935 | 1.439 | 0.707 | 1.32 | 1.54 | 1.293 | 0.8 | 1.941 | 1.834 | 1.333 | 0.876 | 0.99 | 1.082 | 0.55 | 0.762 | 0.777 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3049
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
62-82
|
0.948
|
26-74
|
0.999
|
— | — |
0.000
|
— | — |
0.538
|
0.217
|
0.066
|
0.706
|
0.161
|
0.105
|
0.066
|
0.015
|
0.079
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001833
|
2.000
|
2.000
|
Hsc_gene_19130.t1;Hsc_gene_25623.t1
|
Hsc_gene_25623.t1
|
— |
O02658.1 Serine/threonine-protein phosphatase PP1-gamma [Caenorhabditis elegans]
|
KAF7638997.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.830|GO:0005575_0.770|GO:0110165_0.760|GO:0009987_0.737|GO:0003674_0.711|GO:0005622_0.678|GO:0005737_0.604|GO:0016020_0.597|GO:0065007_0.579|GO:0050789_0.571|GO:0003824_0.560|GO:0050794_0.551|GO:0016787_0.517|GO:0140096_0.517|GO:0043226_0.504|GO:0016788_0.502
|
IPR004843+76-252+|IPR006186+46-302_87-114_120-144_121-126_157-183_187-214_243-263_265-281+|IPR029052+69-302_72-301+|IPR050341+75-295+
|
SM00156+46-302+
|
PF00149+76-252+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+75-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
303-303
|
1.000
|
1-302
|
3icf_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
34120.450
|
8.102
|
7.000
|
20.792
|
12.871
|
44.224
|
55.776
|
12.211
|
8.581
|
46.535
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1533.141
|
81.510
|
89.387
|
359.930
|
820.139
|
4535.210
|
382.180
|
5205.875
|
0.000
|
2404.656
|
1374.089
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.005
|
2.119
|
1.157
|
2.481
|
-3.559
|
— |
-3.621
|
-12.029
|
9.348
|
— | — | — |
No JSON data available for plots.