Hg_chrom2_TN10mRNA_3190
Organism: Heterodera glycines Gene Locus: chr2:5714481-5715625 Feature type: polypeptideProtein Sequence
Length: 244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.191 | 1.144 | 0.745 | 0.707 | 1.708 | 1.051 | 0.195 | 1.025 | 1.366 | 1.551 | 1.056 | 1.688 | 0.797 | 0.631 | 0.92 | 0.995 | 0.941 | 0.807 | 0.946 | 0.964 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3050
|
— | — |
1.667
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.440
|
0.309
|
0.013
|
0.722
|
0.106
|
0.117
|
0.151
|
0.006
|
0.187
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001133
|
3.000
|
2.000
|
Hsc_gene_19099.t1;Hsc_gene_528.t1
|
Hsc_gene_21034.t1
|
— |
P93207.2 14-3-3 protein 10 [Solanum lycopersicum]
|
XP_052189387.1 14-3-3 protein 10 [Diospyros lotus]
|
KAK2999005
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.901|GO:0005575_0.842|GO:0110165_0.835|GO:0009987_0.766|GO:0005622_0.732|GO:0016020_0.672|GO:0065007_0.671|GO:0005737_0.655|GO:0003674_0.637|GO:0050789_0.635|GO:0043226_0.625|GO:0005488_0.590|GO:0043227_0.549|GO:0005515_0.544|GO:0050794_0.505
|
IPR000308+1-244_6-235_38-67_124-146_158-184_185-211+|IPR023410+6-244_13-234+|IPR036815+1-243_6-234+
|
SM00101+6-244+
|
PF00244+13-234+14-3-3_protein
|
— |
PTHR18860+6-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
239-244
|
1.000
|
1-238
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
27790.890
|
5.217
|
-4.500
|
27.869
|
9.426
|
49.590
|
50.410
|
13.525
|
14.344
|
44.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
767.205
|
2.916
|
6.045
|
32.285
|
117.599
|
2438.699
|
74.475
|
3502.423
|
0.000
|
1041.107
|
594.918
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.335
|
2.532
|
1.835
|
4.388
|
-5.021
|
— |
-5.406
|
-10.817
|
5.870
|
— | — | — |
No JSON data available for plots.