Hg_chrom2_TN10mRNA_3192
Organism: Heterodera glycines Gene Locus: chr2:5720263-5721753 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 1.329 | 1.187 | 0.704 | 1.088 | 0.942 | 0.632 | 0.816 | 1.451 | 0.772 | 1.237 | 0.72 | 2.268 | 1.02 | 1.166 | 1.05 | 1.004 | 0.68 | 0.628 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3052
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KPRK
|
— | — |
8-57
|
0.982
|
— | — |
0.000
|
— | — |
0.190
|
0.361
|
0.234
|
0.513
|
0.067
|
0.049
|
0.078
|
0.309
|
0.107
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000786
|
5.000
|
1.000
|
Hsc_gene_19097.t1
|
Hsc_gene_19097.t1
|
— |
P0CB50.1 Peroxiredoxin-1 [Gallus gallus]
|
KAI3416203.1 Peroxiredoxin-1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016209|GO:0016491|GO:0051920
|
GO:0008150_0.867|GO:0009987_0.800|GO:0005575_0.787|GO:0110165_0.781|GO:0003674_0.773|GO:0005622_0.732|GO:0050896_0.703|GO:0005737_0.701|GO:0016020_0.598|GO:0051716_0.586|GO:0043226_0.573|GO:0042221_0.553|GO:0043227_0.551|GO:0043229_0.547|GO:0006950_0.540|GO:0008152_0.527|GO:0043231_0.511|GO:0003824_0.507|GO:0044237_0.501|GO:0070887_0.501
|
IPR000866+56-188+|IPR013766+54-212+|IPR019479+209-243+|IPR036249+56-243+|IPR050217+37-244+
|
— |
PF00578+56-188+AhpC/TSA_family|PF10417+209-243+C-terminal_domain_of_1-Cys_peroxiredoxin
|
G3DSA:3.40.30.10:FF:000003+50-245+Peroxiredoxin_1
|
PTHR10681+37-244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
222-245
|
1.000
|
1-221
|
4fh8_J
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
27981.640
|
8.026
|
4.000
|
28.571
|
13.469
|
51.429
|
48.571
|
15.510
|
13.061
|
48.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
453.861
|
42.447
|
288.377
|
208.256
|
278.400
|
455.715
|
1288.163
|
428.531
|
104.840
|
785.802
|
493.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.534
|
2.157
|
-0.360
|
0.388
|
0.725
|
1.509
|
— |
1.726
|
— | — | — | — | — |
No JSON data available for plots.