Hg_chrom2_TN10mRNA_3193
Organism: Heterodera glycines Gene Locus: chr2:5722792-5725688 Feature type: polypeptideProtein Sequence
Length: 536
(Signal peptide: 1-14)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.477 | 0.998 | 1.153 | 0.193 | 1.213 | 0.718 | 0.844 | 1.679 | 0.912 | 1.639 | 1.018 | 1.427 | 1.71 | 0.897 | 1.028 | 1.013 | 0.581 | 0.933 | 2.009 | 1.043 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3053
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-14
|
— |
0.989
|
— |
0.000
|
0.398
|
0.185
|
0.022
|
0.542
|
0.299
|
0.330
|
0.211
|
0.013
|
0.161
|
0.343
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003290
|
2.000
|
1.000
|
Hsc_gene_19096.t1
|
Hsc_gene_19096.t1
|
— |
P05656.1 Levanase [Bacillus subtilis subsp. subtilis str. 168]
|
WDR79814.1 putative GH32 family protein [Heterodera schachtii]
|
WP_165801630
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975
|
GO:0008150_0.770|GO:0005575_0.586|GO:0110165_0.586|GO:0005622_0.551|GO:0016020_0.530|GO:0003674_0.525
|
IPR001362+41-488+|IPR013148+41-379+|IPR013320+379-499+|IPR023296+36-380_39-379+|IPR051214+37-505+
|
SM00640+41-488+
|
PF00251+41-379+Glycosyl_hydrolases_family_32_N-terminal_domain
|
— |
PTHR43101+37-505+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-536
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
61897.660
|
6.421
|
-1.000
|
28.731
|
15.672
|
46.455
|
53.545
|
15.112
|
13.619
|
43.843
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
black
|
501.887
|
2.865
|
14.752
|
9.121
|
34.068
|
2770.743
|
1055.782
|
248.505
|
0.000
|
644.818
|
368.467
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.130
|
1.539
|
— |
1.873
|
6.360
|
-1.382
|
-3.593
|
2.233
|
-10.117
|
— | — | — | — |