Hg_chrom2_TN10mRNA_3196
Organism: Heterodera glycines Gene Locus: chr2:5747374-5748691 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 1.213 | 1.344 | 0.75 | 0.942 | 1.003 | 0.725 | 0.435 | 1.353 | 0.764 | 1.252 | 0.767 | 2.174 | 0.92 | 1.154 | 0.994 | 1.069 | 0.791 | 0.669 | 0.895 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3056
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.182
|
0.488
|
0.177
|
0.562
|
0.090
|
0.045
|
0.071
|
0.241
|
0.130
|
0.209
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000786
|
5.000
|
1.000
|
Hsc_gene_19097.t1
|
Hsc_gene_19097.t1
|
— |
P0CB50.1 Peroxiredoxin-1 [Gallus gallus]
|
KAI3416203.1 Peroxiredoxin-1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016209|GO:0016491|GO:0051920
|
GO:0008150_0.865|GO:0009987_0.799|GO:0005575_0.785|GO:0110165_0.779|GO:0003674_0.773|GO:0005622_0.725|GO:0050896_0.703|GO:0005737_0.697|GO:0016020_0.594|GO:0051716_0.586|GO:0043226_0.567|GO:0042221_0.553|GO:0043227_0.546|GO:0043229_0.541|GO:0006950_0.540|GO:0008152_0.527|GO:0003824_0.511|GO:0043231_0.507|GO:0044237_0.501
|
IPR000866+41-173+|IPR013766+39-197+|IPR019479+194-228+|IPR024706+34-230+|IPR036249+41-228+|IPR050217+23-229+
|
— |
PF00578+41-173+AhpC/TSA_family|PF10417+194-228+C-terminal_domain_of_1-Cys_peroxiredoxin
|
G3DSA:3.40.30.10:FF:000003+35-230+Peroxiredoxin_1
|
PTHR10681+23-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
207-230
|
1.000
|
1-206
|
4fh8_J
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
26076.500
|
8.006
|
3.000
|
27.826
|
12.609
|
50.435
|
49.565
|
14.783
|
13.043
|
50.870
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
253.024
|
39.750
|
177.237
|
89.536
|
133.816
|
396.791
|
1280.661
|
181.921
|
33.317
|
219.598
|
139.763
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.926
|
1.034
|
-0.876
|
0.547
|
1.583
|
1.700
|
-1.223
|
2.954
|
— | — | — | — | — |
No JSON data available for plots.