Hg_chrom2_TN10mRNA_3197
Organism: Heterodera glycines Gene Locus: chr2:5749853-5753211 Feature type: polypeptideProtein Sequence
Length: 566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.555 | 0.945 | 1.156 | 0.244 | 1.237 | 0.815 | 0.778 | 1.855 | 0.903 | 1.624 | 1.017 | 1.351 | 1.521 | 0.883 | 0.974 | 0.909 | 0.724 | 0.883 | 2.039 | 1.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3057
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.449
|
0.159
|
0.025
|
0.620
|
0.269
|
0.292
|
0.258
|
0.038
|
0.164
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003290
|
2.000
|
1.000
|
Hsc_gene_19096.t1
|
— | — |
P05656.1 Levanase [Bacillus subtilis subsp. subtilis str. 168]
|
WDR79814.1 putative GH32 family protein [Heterodera schachtii]
|
WP_165801630
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975
|
GO:0008150_0.776|GO:0005575_0.586|GO:0110165_0.586|GO:0005622_0.552|GO:0003674_0.530|GO:0016020_0.512
|
IPR001362+120-518+|IPR013148+120-181_199-411+|IPR013320+411-529+|IPR023296+105-188_118-401_189-430+|IPR051214+215-535+
|
SM00640+120-518+
|
PF00251+120-181_199-411+Glycosyl_hydrolases_family_32_N-terminal_domain
|
— |
PTHR43101+215-535+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-566
|
3sc7_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
65495.620
|
6.315
|
-2.500
|
28.975
|
15.901
|
46.996
|
53.004
|
15.194
|
13.781
|
43.640
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
black
|
450.580
|
3.427
|
11.120
|
9.165
|
21.344
|
1505.372
|
784.965
|
136.740
|
3.438
|
1041.661
|
596.708
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.464
|
1.281
|
— |
1.190
|
6.153
|
-0.929
|
-3.576
|
2.668
|
-8.346
|
— |
-5.067
|
— | — |
No JSON data available for plots.