Hg_chrom2_TN10mRNA_3199
Organism: Heterodera glycines Gene Locus: chr2:5762352-5763298 Feature type: polypeptideProtein Sequence
Length: 212
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.262 | 0.658 | 0.6 | 0.488 | 0.472 | 1.451 | 0.393 | 0.708 | 1.048 | 1.721 | 0.5 | 1.387 | 1.31 | 1.27 | 0.866 | 1.819 | 0.773 | 0.929 | 1.089 | 1.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3059
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— |
KPRK
|
— | — |
28-86
|
0.974
|
— | — |
0.000
|
— | — |
0.208
|
0.170
|
0.012
|
0.194
|
0.748
|
0.413
|
0.674
|
0.051
|
0.192
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006774
|
1.000
|
1.000
|
Hsc_gene_21043.t1
|
Hsc_gene_21043.t1
|
— |
Q871R7.1 Protein yop-1 [Neurospora crassa OR74A]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.891|GO:0005575_0.760|GO:0110165_0.760|GO:0016020_0.710|GO:0071944_0.673|GO:0005886_0.671|GO:0009987_0.633|GO:0005622_0.632|GO:0043226_0.602|GO:0043229_0.588|GO:0005737_0.578|GO:0043227_0.578|GO:0043231_0.567|GO:0005773_0.562|GO:0012505_0.545
|
IPR004345+122-201_126-199+
|
— |
PF03134+126-199+TB2/DP1,_HVA22_family
|
— |
PTHR12300+122-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61
|
1.000
|
62-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
23393.990
|
8.627
|
4.500
|
15.094
|
12.264
|
41.038
|
58.962
|
8.962
|
6.132
|
51.887
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
442.382
|
13.128
|
46.069
|
46.851
|
190.210
|
675.354
|
267.824
|
658.103
|
6.522
|
1218.954
|
699.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.580
|
1.697
|
— |
1.991
|
1.842
|
-1.325
|
— |
-1.151
|
-7.676
|
— | — | — | — |
No JSON data available for plots.