Hg_chrom2_TN10mRNA_3201
Organism: Heterodera glycines Gene Locus: chr2:5766171-5769248 Feature type: polypeptideProtein Sequence
Length: 437
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 2.342 | 0.915 | 1.026 | 1.297 | 1.35 | 0.681 | 1.03 | 1.22 | 1.515 | 1.144 | 1.211 | 1.653 | 0.484 | 1.308 | 0.785 | 0.6 | 0.312 | 0.176 | 0.404 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3061
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
1-Not_Clustered
|
0.322
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KRKL,KRRR,ERRRRRRKR,RKLMEKFHFELSKKQRI
|
— | — | — | — |
1-23
|
0.989
|
1.000
|
0.000
|
0.000
|
0.447
|
0.180
|
0.113
|
0.545
|
0.301
|
0.033
|
0.125
|
0.160
|
0.126
|
0.458
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001134
|
1.000
|
4.000
|
Hsc_gene_21041.t1;Hsc_gene_21041.t2;Hsc_gene_21041.t3;Hsc_gene_21041.t4
|
— | — |
P93823.1 RING-H2 finger protein ATL1 [Arabidopsis thaliana]
|
BAJ93750.1 predicted protein [Hordeum vulgare subsp. vulgare]
|
KAJ4767151
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016567|GO:0016740
|
GO:0008150_0.862|GO:0003674_0.699|GO:0005575_0.566|GO:0009987_0.566|GO:0110165_0.566|GO:0008152_0.515|GO:0043170_0.515
|
IPR001841+312-356_313-355_313-356+|IPR013083+274-361+|IPR044600+295-420+
|
SM00184+313-355+
|
PF13639+312-356+Ring_finger_domain
|
— |
PTHR46913+295-420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
360-437
|
1.000
|
1-359
|
5ulk_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
49816.540
|
8.180
|
9.500
|
28.833
|
9.611
|
53.318
|
46.682
|
16.018
|
12.815
|
44.622
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
248.395
|
39.402
|
117.640
|
19.353
|
49.293
|
127.556
|
47.524
|
12.364
|
883.657
|
269.063
|
532.460
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.349
|
-1.163
|
-2.495
|
1.320
|
1.383
|
-1.417
|
-3.474
|
2.082
|
— |
-5.360
|
— | — | — |