Hg_chrom2_TN10mRNA_3203
Organism: Heterodera glycines Gene Locus: chr2:5769582-5771307 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.159 | 0.673 | 1.111 | 0.887 | 0.857 | 0.989 | 0.383 | 0.0 | 1.358 | 1.043 | 0.877 | 1.513 | 1.429 | 0.989 | 1.509 | 1.424 | 1.054 | 1.267 | 0.247 | 0.378 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3063
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.695
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.046
|
0.145
|
0.017
|
0.169
|
0.520
|
0.484
|
0.481
|
0.016
|
0.597
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006775
|
1.000
|
1.000
|
Hsc_gene_21040.t1
|
Hsc_gene_21040.t1
|
— |
P27105.3 Stomatin [Homo sapiens]
|
KAI3421049.1 Mechanosensory protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0016020
|
GO:0005575_0.926|GO:0110165_0.924|GO:0016020_0.850|GO:0008150_0.759|GO:0071944_0.750|GO:0005886_0.729|GO:0009987_0.598|GO:0043226_0.585|GO:0003674_0.540|GO:0043227_0.534|GO:0005622_0.530
|
IPR001107+47-205_51-222+|IPR001972+54-76_102-123_137-154_157-180_181-199_200-221_225-248+|IPR036013+79-212_86-196+|IPR043202+23-273+
|
SM00244+47-205+
|
PF01145+51-222+SPFH_domain_/_Band_7_family
|
G3DSA:3.30.479.30:FF:000002+85-195+band_7_protein_AGAP004871
|
PTHR10264+23-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
285-311
|
1.000
|
1-284
|
9oh9_P
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
34295.550
|
8.672
|
6.000
|
24.437
|
6.752
|
47.588
|
52.412
|
13.183
|
11.254
|
54.662
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
382.913
|
7.338
|
28.032
|
70.833
|
291.332
|
984.615
|
220.899
|
557.392
|
55.420
|
823.515
|
494.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.700
|
3.133
|
1.447
|
2.009
|
1.771
|
-2.145
|
-0.934
|
-1.188
|
-4.030
|
— | — | — | — |
No JSON data available for plots.