Hg_chrom2_TN10mRNA_3204
Organism: Heterodera glycines Gene Locus: chr2:5771528-5773739 Feature type: polypeptideProtein Sequence
Length: 209
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.723 | 1.558 | 0.957 | 2.805 | 0.877 | 0.613 | 0.57 | 0.957 | 0.957 | 1.358 | 1.885 | 1.126 | 0.93 | 0.46 | 0.488 | 0.957 | 0.628 | 0.942 | 1.104 | 1.267 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3064
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.997
|
1.000
|
0.000
|
0.000
|
0.168
|
0.500
|
0.063
|
0.199
|
0.145
|
0.073
|
0.243
|
0.212
|
0.226
|
0.891
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003028
|
2.000
|
1.000
|
Hsc_gene_21243.t1
|
— | — | — |
CDJ96117.1 Phospholipase A2 domain containing protein [Haemonchus contortus]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004623|GO:0005509|GO:0006644|GO:0016042|GO:0050482
|
GO:0008150_0.939|GO:0005575_0.839|GO:0110165_0.839|GO:0009987_0.809|GO:0003674_0.780|GO:0008152_0.717|GO:0044238_0.706|GO:0044237_0.698|GO:0005488_0.677|GO:0065007_0.645|GO:0050789_0.638|GO:0003824_0.629|GO:0050794_0.620|GO:0005622_0.618|GO:0016787_0.611|GO:0006629_0.610|GO:0044255_0.606|GO:0016788_0.590|GO:0052689_0.578|GO:0004620_0.574|GO:0004623_0.574|GO:0016298_0.574|GO:0006793_0.541|GO:0006796_0.541|GO:0019637_0.532|GO:0006644_0.526|GO:0050896_0.513
|
IPR001211+8-160+|IPR016090+21-162_23-147+|IPR033112+133-143+|IPR033113+64-71+|IPR036444+21-149_21-166+
|
SM00085+21-162+
|
PF00068+23-147+Phospholipase_A2
|
— |
PTHR11716+8-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
23631.550
|
8.433
|
11.000
|
27.273
|
11.005
|
46.890
|
53.110
|
16.746
|
10.526
|
50.239
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
175.237
|
25.190
|
61.703
|
218.863
|
52.926
|
87.647
|
30.216
|
40.026
|
441.544
|
241.788
|
327.398
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.059
|
2.983
|
1.937
|
-2.083
|
0.744
|
-1.526
|
-1.238
|
— | — | — | — | — | — |