Hg_chrom2_TN10mRNA_3206
Organism: Heterodera glycines Gene Locus: chr2:5781600-5786143 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.69 | 0.562 | 1.079 | 0.758 | 0.879 | 1.014 | 0.68 | 1.429 | 0.83 | 1.634 | 0.466 | 1.164 | 2.259 | 0.972 | 1.66 | 1.256 | 0.685 | 0.999 | 1.014 | 0.776 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3066
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRQAQLGMPEQRRQKM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.381
|
0.374
|
0.017
|
0.547
|
0.257
|
0.465
|
0.205
|
0.009
|
0.268
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006777
|
1.000
|
1.000
|
Hsc_gene_21037.t1
|
Hsc_gene_21037.t1
|
— |
Q5IS82.1 NT-3 growth factor receptor [Saimiri boliviensis boliviensis]
|
KAH7720309.1 Fibroblast growth factor receptor 1 IIIb VT- isoform [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.901|GO:0005575_0.857|GO:0110165_0.855|GO:0009987_0.816|GO:0065007_0.682|GO:0050789_0.665|GO:0003674_0.645|GO:0016020_0.633|GO:0005622_0.626|GO:0032501_0.619|GO:0050896_0.618|GO:0050794_0.615|GO:0032502_0.583|GO:0048856_0.583|GO:0016043_0.574|GO:0071840_0.574|GO:0051716_0.568|GO:0007154_0.533|GO:0023052_0.529|GO:0003824_0.524|GO:0007275_0.519|GO:0005737_0.514
|
IPR000719+123-444+|IPR000980+27-125+|IPR001245+156-436+|IPR011009+157-440+|IPR036860+18-127_22-101+|IPR050198+36-438+
|
— |
PF07714+156-436+Protein_tyrosine_and_serine/threonine_kinase
|
— |
PTHR24418+36-438+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-455
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
52036.670
|
7.451
|
6.500
|
25.275
|
14.945
|
44.615
|
55.385
|
14.066
|
11.209
|
46.813
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
463.180
|
191.829
|
269.779
|
178.693
|
274.950
|
413.659
|
2820.299
|
227.033
|
41.889
|
353.907
|
220.185
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.259
|
-0.240
|
-0.483
|
0.589
|
0.603
|
2.781
|
-0.977
|
3.780
|
-3.204
|
— | — | — | — |
No JSON data available for plots.