Hg_chrom2_TN10mRNA_3209
Organism: Heterodera glycines Gene Locus: chr2:5793278-5794180 Feature type: polypeptideProtein Sequence
Length: 211
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.212 | 0.992 | 0.776 | 0.49 | 1.343 | 1.094 | 0.282 | 1.185 | 1.474 | 1.537 | 1.221 | 1.394 | 0.658 | 0.638 | 0.967 | 0.948 | 1.088 | 0.934 | 0.729 | 0.976 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3069
|
— | — |
1.667
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.916
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
19-47
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.512
|
0.344
|
0.068
|
0.676
|
0.147
|
0.083
|
0.155
|
0.007
|
0.150
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001133
|
3.000
|
2.000
|
Hsc_gene_19099.t1;Hsc_gene_528.t1
|
— | — |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
KAI6224300.1 14-3-3 protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.925|GO:0005575_0.826|GO:0110165_0.818|GO:0009987_0.792|GO:0005622_0.730|GO:0003674_0.696|GO:0005737_0.656|GO:0005488_0.644|GO:0065007_0.640|GO:0016020_0.607|GO:0050789_0.603|GO:0043226_0.577|GO:0005515_0.568|GO:0050794_0.529|GO:0051179_0.504
|
IPR000308+1-202_1-211_14-43_59-83_91-113_125-151_152-178+|IPR023410+1-201_1-211+|IPR036815+1-210_3-204+
|
SM00101+1-211+
|
PF00244+1-201+14-3-3_protein
|
— |
PTHR18860+1-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
206-211
|
1.000
|
1-205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
23823.500
|
7.812
|
3.500
|
27.488
|
9.005
|
49.289
|
50.711
|
15.166
|
12.322
|
45.498
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
143.619
|
51.734
|
72.565
|
53.377
|
39.438
|
230.585
|
36.990
|
389.800
|
48.059
|
264.357
|
171.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.336
|
-0.467
|
2.561
|
-2.631
|
0.648
|
-3.253
|
— | — | — | — | — |
No JSON data available for plots.