Hg_chrom2_TN10mRNA_3210
Organism: Heterodera glycines Gene Locus: chr2:5795415-5804047 Feature type: polypeptideProtein Sequence
Length: 1,243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 1.085 | 0.848 | 1.221 | 1.703 | 1.238 | 0.805 | 1.408 | 0.715 | 1.0 | 1.085 | 1.42 | 0.782 | 0.758 | 1.757 | 1.011 | 0.976 | 0.536 | 1.609 | 0.331 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3070
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cell_membrane
|
nucleus
|
EARKADERKRKMRI,RRRRIAKEEERKKKYE,RKRWREQQQKRRERKKDE,RREENGGDPFAMRRKIGR,KKSEEERRRRIAKEEERKK,RRIAKEEERKKKYEEERKR,KKKYEEERKRWREQQQKRR,KKYEEERKRWREQQQKRRE
|
— | — | — | — | — |
0.807
|
0.427
|
0.000
|
— |
0.174
|
0.105
|
0.051
|
0.296
|
0.206
|
0.299
|
0.243
|
0.125
|
0.681
|
0.583
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000787
|
3.000
|
3.000
|
Hsc_gene_19102.t1;Hsc_gene_21032.t1;Hsc_gene_21032.t2
|
Hsc_gene_19102.t1;Hsc_gene_21032.t2
|
— | — |
XP_024500055.1 GDNF/GAS1 domain-containing protein [Strongyloides ratti];CEF60846.1 GDNF/GAS1 domain-containing protein [Strongyloides ratti]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0038023
|
— |
IPR003438+445-794+|IPR016017+66-143_498-571_498-579_603-689+|IPR037193+66-148_496-572+
|
SM00907+66-143_498-579_603-689+
|
PF02351+498-571+GDNF/GAS1_domain
|
— |
PTHR10269+445-794+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
161-489;748-954
|
3.000
|
1-160;490-747;955-1243
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
141387.880
|
8.023
|
28.500
|
33.467
|
8.850
|
55.994
|
44.006
|
18.584
|
14.883
|
47.305
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
greenyellow
|
918.182
|
307.029
|
1706.707
|
589.597
|
199.479
|
336.949
|
136.907
|
1203.206
|
201.318
|
2186.105
|
1335.482
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.246
|
0.804
|
-1.425
|
-1.594
|
0.771
|
-1.291
|
1.735
|
-2.995
|
— | — | — | — | — |