Hg_chrom2_TN10mRNA_3211
Organism: Heterodera glycines Gene Locus: chr2:5806677-5808323 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.538 | 1.794 | 0.73 | 0.958 | 0.36 | 0.633 | 0.147 | 0.463 | 1.646 | 2.169 | 0.514 | 0.908 | 3.344 | 0.534 | 0.567 | 1.235 | 0.658 | 1.45 | 0.95 | 1.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3071
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.100
|
0.087
|
0.013
|
0.096
|
0.416
|
0.239
|
0.178
|
0.015
|
0.736
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006778
|
1.000
|
1.000
|
Hsc_gene_21031.t1
|
Hsc_gene_21031.t1;Hsc_gene_21031.t2
|
— | — |
KAF7633662.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.956|GO:0009987_0.910|GO:0003674_0.664|GO:0050896_0.644|GO:0005575_0.641|GO:0110165_0.641|GO:0065007_0.637|GO:0051716_0.623|GO:0005886_0.618|GO:0016020_0.618|GO:0071944_0.618|GO:0050789_0.613|GO:0050794_0.595|GO:0032501_0.579|GO:0032502_0.545|GO:0048856_0.545|GO:0005622_0.539|GO:0005737_0.539|GO:0005488_0.538
|
IPR000276+18-42_33-294_51-72_92-114_98-114_186-209_231-255+|IPR017452+33-294+
|
— |
PF00001+33-294+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+22-297+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-324
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
37633.460
|
7.088
|
1.500
|
13.272
|
18.827
|
36.111
|
63.889
|
7.099
|
6.173
|
45.370
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
52.425
|
0.922
|
8.673
|
3.048
|
6.007
|
7.325
|
11.554
|
25.353
|
70.353
|
153.016
|
117.589
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.005
|
— |
-1.399
|
— | — | — |
1.690
|
-0.996
|
— |
-4.333
|
-4.414
|
— | — |
No JSON data available for plots.