Hg_chrom2_TN10mRNA_3213
Organism: Heterodera glycines Gene Locus: chr2:5812416-5814786 Feature type: polypeptideProtein Sequence
Length: 431
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 1.511 | 1.012 | 1.12 | 1.121 | 1.368 | 0.608 | 1.16 | 1.237 | 1.662 | 1.125 | 1.774 | 1.933 | 0.402 | 1.373 | 0.762 | 0.723 | 0.352 | 0.357 | 0.341 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3073
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.902
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
cytoplasm
|
nucleus
|
KRKL,RKDEKRRRRRKR,RKLMEKFHFELSKKQRI
|
— | — | — | — |
1-23
|
0.989
|
1.000
|
1.000
|
1.000
|
0.415
|
0.058
|
0.028
|
0.458
|
0.345
|
0.258
|
0.337
|
0.019
|
0.260
|
0.222
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001135
|
3.000
|
2.000
|
Hsc_gene_21029.t1;Hsc_gene_21029.t2
|
Hsc_gene_21029.t1;Hsc_gene_21029.t2
|
— |
Q9LSW9.1 RING-H2 finger protein ATL16 [Arabidopsis thaliana]
|
KAH7676576.1 putative E3 ubiquitin ligase protein [Dioscorea alata]
|
KAI3449172
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.859|GO:0003674_0.720|GO:0005575_0.590|GO:0110165_0.590|GO:0009987_0.574|GO:0016020_0.502
|
IPR001841+338-382_339-381_339-382+|IPR013083+305-389+
|
SM00184+339-381+
|
PF13639+338-382+Ring_finger_domain
|
— |
PTHR46539+247-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
387-431
|
1.000
|
1-386
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
49453.980
|
8.490
|
13.000
|
28.770
|
10.905
|
50.348
|
49.652
|
16.473
|
12.297
|
41.995
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
59.384
|
98.112
|
34.882
|
28.836
|
36.181
|
50.794
|
16.015
|
5.743
|
115.335
|
71.842
|
90.482
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.719
|
-1.904
|
— | — | — |
-1.658
|
-3.246
|
1.616
|
— | — | — | — | — |