Hg_chrom2_TN10mRNA_3218
Organism: Heterodera glycines Gene Locus: chr2:5858890-5860156 Feature type: polypeptideProtein Sequence
Length: 170
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 2.326 | 0.856 | 2.028 | 0.98 | 1.659 | 0.7 | 2.059 | 2.092 | 1.033 | 0.446 | 2.422 | 0.817 | 0.452 | 0.96 | 0.252 | 1.35 | 0.535 | 0.905 | 0.692 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3078
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.841
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.396
|
— | — |
0.270
|
0.060
|
0.027
|
0.476
|
0.338
|
0.301
|
0.440
|
0.006
|
0.261
|
0.279
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001135
|
3.000
|
2.000
|
Hsc_gene_21029.t1;Hsc_gene_21029.t2
|
Hsc_gene_21029.t2
|
— |
Q9LSW9.1 RING-H2 finger protein ATL16 [Arabidopsis thaliana]
|
KAH7676576.1 putative E3 ubiquitin ligase protein [Dioscorea alata]
|
KAJ3692172
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.853|GO:0003674_0.692|GO:0009987_0.545|GO:0005575_0.525|GO:0110165_0.519|GO:0008152_0.508
|
IPR001841+87-131_88-130_88-131+|IPR013083+49-138+
|
SM00184+88-130+
|
PF13639+87-131+Ring_finger_domain
|
— |
PTHR46539+8-155+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
136-170
|
1.000
|
1-135
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
19363.090
|
6.121
|
-1.500
|
22.353
|
10.588
|
48.824
|
51.176
|
11.765
|
10.588
|
48.235
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
8.027
|
18.901
|
9.809
|
7.862
|
6.830
|
5.968
|
16.761
|
7.542
|
5.511
|
3.358
|
4.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.181
|
-1.403
|
— | — | — |
1.502
|
— |
1.298
|
— | — | — | — | — |
No JSON data available for plots.