Hg_chrom2_TN10mRNA_3220
Organism: Heterodera glycines Gene Locus: chr2:5869614-5874482 Feature type: polypeptideProtein Sequence
Length: 769
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.907 | 1.391 | 0.662 | 1.569 | 1.517 | 1.234 | 0.851 | 1.365 | 0.578 | 0.773 | 1.025 | 1.53 | 0.759 | 0.7 | 1.911 | 1.189 | 0.917 | 0.591 | 1.3 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3080
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.489
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RMGKRRL,RKIGRHHKK,KRRLETMGRGERKKGT,KKKDYIEKERQRKEKE,RKEKEQQEDSQRKKSE,RRRRIAKEEERKKKYE,RKKKYEEERKSRRKRCA,RREENGGDPFAMRRKIGR,KKSEEERRRRIAKEEERKK
|
48-70
|
0.997
|
24-61
|
0.992
|
— | — |
0.004
|
— | — |
0.097
|
0.187
|
0.020
|
0.241
|
0.089
|
0.086
|
0.211
|
0.055
|
0.365
|
0.948
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000787
|
3.000
|
3.000
|
Hsc_gene_19102.t1;Hsc_gene_21032.t1;Hsc_gene_21032.t2
|
— | — | — |
KAI1713650.1 GDNF/GAS1 domain protein [Ditylenchus destructor]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR037193+413-480+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
174-406;679-769
|
2.000
|
1-173;407-678
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
86694.210
|
8.841
|
36.500
|
31.599
|
8.453
|
56.307
|
43.693
|
18.856
|
12.744
|
50.585
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
90.630
|
42.712
|
257.721
|
57.989
|
20.573
|
46.755
|
9.627
|
117.173
|
85.040
|
125.522
|
108.172
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.363
|
— |
-2.043
|
-1.529
|
1.201
|
-2.273
|
1.225
|
-3.466
|
— | — | — | — | — |
No JSON data available for plots.