Hg_chrom2_TN10mRNA_3222
Organism: Heterodera glycines Gene Locus: chr2:5892877-5893917 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.705 | 0.551 | 0.522 | 1.01 | 1.166 | 1.353 | 2.273 | 1.01 | 1.229 | 0.918 | 2.228 | 0.631 | 0.874 | 1.082 | 0.758 | 0.745 | 1.607 | 0.583 | 0.223 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3082
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.662
|
0.551
|
0.290
|
0.577
|
0.036
|
0.139
|
0.067
|
0.099
|
0.067
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006781
|
1.000
|
1.000
|
Hsc_gene_24456.t1
|
Hsc_gene_24456.t1
|
— |
O76387.1 Probable peptidyl-tRNA hydrolase 2 [Caenorhabditis elegans]
|
KAF8382454.1 cox-16 [Pristionchus pacificus]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004045
|
GO:0005575_0.885|GO:0110165_0.873|GO:0005622_0.784|GO:0005737_0.770|GO:0016020_0.766|GO:0043226_0.717|GO:0043229_0.712|GO:0043227_0.695|GO:0043231_0.680|GO:0005739_0.574|GO:0008150_0.552|GO:0003674_0.510
|
IPR002833+14-130_16-130+|IPR023476+15-131_15-132+
|
— |
PF01981+16-130+Peptidyl-tRNA_hydrolase_PTH2
|
G3DSA:3.40.1490.10:FF:000002+13-131+Peptidyl-tRNA_hydrolase_2,_mitochondrial
|
PTHR12649+14-130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
14192.450
|
9.238
|
6.000
|
25.000
|
8.333
|
42.424
|
57.576
|
15.909
|
9.091
|
52.273
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
45.709
|
9.346
|
15.773
|
29.209
|
112.220
|
101.983
|
65.037
|
55.588
|
2.570
|
52.118
|
30.883
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.508
|
0.999
|
1.910
|
— |
-0.635
|
-0.983
|
— | — | — | — | — | — |
No JSON data available for plots.