Hg_chrom2_TN10mRNA_3223
Organism: Heterodera glycines Gene Locus: chr2:5896436-5896785 Feature type: polypeptideProtein Sequence
Length: 95
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 1.469 | 1.34 | 0.0 | 1.228 | 1.08 | 1.253 | 1.053 | 0.936 | 1.422 | 1.116 | 2.477 | 0.877 | 1.012 | 1.289 | 0.752 | 0.518 | 0.319 | 1.619 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3083
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.486
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.565
|
0.184
|
0.047
|
0.777
|
0.262
|
0.106
|
0.108
|
0.003
|
0.220
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000716
|
5.000
|
1.000
|
Hsc_gene_25497.t1
|
— | — | — |
KAI1715493.1 14-3-3 protein domain-containing protein [Ditylenchus destructor]
|
KAF8271533
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.896|GO:0005575_0.846|GO:0110165_0.840|GO:0009987_0.773|GO:0003674_0.695|GO:0005488_0.685|GO:0005622_0.674|GO:0065007_0.670|GO:0050789_0.630|GO:0005515_0.609|GO:0005737_0.592|GO:0050794_0.582|GO:0043226_0.564|GO:0016020_0.554|GO:0051179_0.530
|
IPR000308+3-29_4-88_61-90+|IPR023410+5-87+|IPR036815+1-94_5-91+
|
— |
PF00244+5-87+14-3-3_protein
|
— |
PTHR18860+4-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17;74-95
|
1.000
|
18-73
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
10702.070
|
6.469
|
0.000
|
30.526
|
9.474
|
49.474
|
50.526
|
15.789
|
14.737
|
46.316
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
22.698
|
1.544
|
10.651
|
14.847
|
39.967
|
45.641
|
26.994
|
61.487
|
14.709
|
12.849
|
13.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.563
|
3.136
|
— |
1.399
|
— |
-0.744
|
— |
-1.039
|
— | — | — | — | — |
No JSON data available for plots.