Hg_chrom2_TN10mRNA_3224
Organism: Heterodera glycines Gene Locus: chr2:5898760-5906644 Feature type: polypeptideProtein Sequence
Length: 1,887
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.171 | 0.8 | 0.238 | 1.952 | 1.386 | 0.593 | 0.768 | 1.083 | 0.952 | 1.55 | 1.559 | 0.942 | 0.713 | 1.46 | 0.908 | 0.947 | 0.699 | 1.794 | 0.514 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.928
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
PKPS,RKKR,AKKTK,NKRPK,RGKKRTK,RQEKRKL,RRRALNAQIRQKVPKK,KKRTKISPQKRQMRKKVE,KRAFEAKEWSVNELKRECK,RRRKSSSKSRETIWERRRA,RRKSSSKSRETIWERRRAL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.207
|
0.159
|
0.018
|
0.636
|
0.107
|
0.133
|
0.085
|
0.035
|
0.370
|
0.222
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003293
|
1.000
|
2.000
|
Hsc_gene_24457.t1;Hsc_gene_24457.t2
|
Hsc_gene_24457.t2
|
— | — |
KAI3418181.1 hypothetical protein GPALN_010397 [Globodera pallida]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
244-686;838-882;1136-1294
|
4.000
|
1-243;687-837;883-1135;1295-1887
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
218957.760
|
9.349
|
38.500
|
35.029
|
9.009
|
57.605
|
42.395
|
18.919
|
16.110
|
41.918
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
2080.261
|
39.923
|
238.997
|
610.980
|
681.942
|
136.914
|
89.072
|
81.974
|
2674.749
|
6390.153
|
4797.837
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.351
|
3.799
|
1.464
|
— |
-2.302
|
-0.609
|
-0.848
|
— | — | — |
-3.074
|
— | — |
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